Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   K6T24_RS18220 Genome accession   NZ_CP081872
Coordinates   3622734..3623972 (-) Length   412 a.a.
NCBI ID   WP_238185574.1    Uniprot ID   -
Organism   Bacillus toyonensis strain UTDF19-29B     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3617734..3628972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6T24_RS18200 (K6T24_18125) spoVS 3618157..3618417 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  K6T24_RS18205 (K6T24_18130) - 3618567..3619361 (-) 795 WP_001221099.1 TIGR00282 family metallophosphoesterase -
  K6T24_RS18210 (K6T24_18135) rny 3619509..3621074 (-) 1566 WP_000204713.1 ribonuclease Y -
  K6T24_RS18215 (K6T24_18140) recA 3621558..3622589 (-) 1032 WP_001283854.1 recombinase RecA Machinery gene
  K6T24_RS18220 (K6T24_18145) cinA 3622734..3623972 (-) 1239 WP_238185574.1 competence/damage-inducible protein CinA Machinery gene
  K6T24_RS18225 (K6T24_18150) pgsA 3623993..3624571 (-) 579 WP_001052980.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  K6T24_RS18230 (K6T24_18155) - 3624635..3625549 (-) 915 WP_238185575.1 helix-turn-helix domain-containing protein -
  K6T24_RS18235 (K6T24_18160) - 3625571..3626356 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  K6T24_RS18240 (K6T24_18165) - 3626495..3626743 (-) 249 WP_000114447.1 DUF3243 domain-containing protein -
  K6T24_RS18245 (K6T24_18170) ymfI 3626819..3627532 (-) 714 WP_000759600.1 elongation factor P 5-aminopentanone reductase -
  K6T24_RS18250 (K6T24_18175) yfmH 3627633..3628919 (-) 1287 WP_000411962.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45418.75 Da        Isoelectric Point: 5.4733

>NTDB_id=597971 K6T24_RS18220 WP_238185574.1 3622734..3623972(-) (cinA) [Bacillus toyonensis strain UTDF19-29B]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKEA
IASSLGEELVYDENALALISDYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMRPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNAHEAEKLIQHMED
LILERVGEFFYGYDQEFLHYKAIKLLKKKGLTLACAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LSTDGAVSKECARYLAENVKELLKADIGISFTGVAGPDASEHKEPGTVFVGLAIKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=597971 K6T24_RS18220 WP_238185574.1 3622734..3623972(-) (cinA) [Bacillus toyonensis strain UTDF19-29B]
ATGAATGCTGAAATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAACGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGCATTAATGTGTACTACCATACTGTAGTTGGAGATAATAACAAACGATTACAGCAGGCGATTG
AAGTTGCAGAAGAACGTGCGGATATGCTTATTTTTACAGGTGGATTAGGCCCGACAAAAGATGATTTGACGAAGGAAGCA
ATTGCGTCTAGCTTAGGGGAAGAGCTTGTATATGACGAAAATGCATTAGCATTAATAAGCGATTATTTTAAGCGTACAGG
TCGTGAGTTCACTGAAAATAATAAAAAGCAGGCACTCGTTTTGAATGGAGCAACTGTATTTGCAAATGATCACGGTATGG
CACCTGGTATGGGTTTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCGAAAGAAATGAGGCCAATGTAT
GTAAGTTATGTAGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTCTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAACCCGACAATCGCCCCGCTTGCGAATG
ATGGAGAAGTAACATTACGTTTAACTGCGAAGCATCAAAATGCTCATGAAGCGGAGAAACTCATTCAGCATATGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTGCACTATAAGGCGATAAAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTCTTCGGTAATCAAGTAACAGAAAGTGCTGGTG
TGTCTTCAGTATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACATGTACCTGAGGAAGTG
TTGTCTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAAGAATTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGACCAGATGCTTCAGAACATAAAGAGCCGGGAACAGTATTTGTTGGATTGGCGA
TTAAAGATGAACCAACTGTAGTCTTTCCTCTAAATTTAAGCGGAAGTCGTCAACAAATTAGGGAACGCTCAGCAAAATAT
GGGTTTTATCATTTGTATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.981

100

0.59
  cinA Streptococcus mitis SK321

46.778

100

0.476
  cinA Streptococcus pneumoniae TIGR4

46.539

100

0.473
  cinA Streptococcus pneumoniae Rx1

46.062

100

0.468
  cinA Streptococcus pneumoniae R6

46.062

100

0.468
  cinA Streptococcus pneumoniae D39

45.823

100

0.466
  cinA Streptococcus mitis NCTC 12261

45.823

100

0.466
  cinA Streptococcus mutans UA159

45.074

98.544

0.444
  cinA Streptococcus suis isolate S10

41.005

91.748

0.376