Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   K6T23_RS10395 Genome accession   NZ_CP081870
Coordinates   1968514..1969752 (+) Length   412 a.a.
NCBI ID   WP_238284269.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain UTDF19-31A     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1963514..1974752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6T23_RS10370 (K6T23_10360) ymfI 1964584..1965297 (+) 714 WP_056538572.1 elongation factor P 5-aminopentanone reductase -
  K6T23_RS10375 (K6T23_10365) - 1965669..1965926 (+) 258 WP_048003989.1 DUF3243 domain-containing protein -
  K6T23_RS10380 (K6T23_10370) - 1966099..1966890 (+) 792 WP_048003988.1 DUF3388 domain-containing protein -
  K6T23_RS10385 (K6T23_10375) - 1966910..1967818 (+) 909 WP_238284268.1 helix-turn-helix domain-containing protein -
  K6T23_RS10390 (K6T23_10380) pgsA 1967872..1968450 (+) 579 WP_053427240.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  K6T23_RS10395 (K6T23_10385) cinA 1968514..1969752 (+) 1239 WP_238284269.1 competence/damage-inducible protein A Machinery gene
  K6T23_RS10400 (K6T23_10390) recA 1969966..1971003 (+) 1038 WP_053427238.1 recombinase RecA Machinery gene
  K6T23_RS10405 (K6T23_10395) rny 1971411..1972970 (+) 1560 WP_048003983.1 ribonuclease Y -
  K6T23_RS10410 (K6T23_10400) - 1973078..1973881 (+) 804 WP_056537045.1 TIGR00282 family metallophosphoesterase -
  K6T23_RS10415 (K6T23_10405) spoVS 1974015..1974275 (+) 261 WP_034760060.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44715.80 Da        Isoelectric Point: 4.7677

>NTDB_id=597914 K6T23_RS10395 WP_238284269.1 1968514..1969752(+) (cinA) [Rossellomorea marisflavi strain UTDF19-31A]
MNAEIIAVGSELLLGQIANTNAQFISERLAEIGVNVFYHTSVGDNPERLEEVIKHAEERADLLIFTGGLGPTKDDLTKET
IARSLGVSLSMDEEAMDSIRAYFEKVGRVMTPNNEKQALILEGSVPLKNDFGMAPGMVFQQSGKAYILLPGPPSEMRPMF
STYGVPAVMGLMKRKEVIHSRVLRFFGIGESQLEADLEELIDRQTNPTIAPLAGDGEVTLRLTAKHESKDVAETLLNELE
SEIRQTVGEYLYGYDQDSLEGVGFRLLKEKGLTLAAAESLTAGLFQSSLASIAGASSVLEGGVVCYQDSVKRDVLNVREE
TLKNHGAVSRECAIELAANVRTLFKSDIGISFTGVAGPEAQGDLPPGTVWIGIASGDGEPRAYKLTLAGSRNGNRSRTVK
YGWHYLVKEYKA

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=597914 K6T23_RS10395 WP_238284269.1 1968514..1969752(+) (cinA) [Rossellomorea marisflavi strain UTDF19-31A]
ATGAATGCAGAAATTATCGCAGTTGGATCGGAATTACTTTTGGGGCAGATCGCTAATACCAATGCCCAGTTCATCTCAGA
AAGGCTTGCCGAGATCGGAGTGAACGTGTTTTATCATACAAGCGTTGGAGATAACCCGGAAAGACTTGAAGAGGTCATCA
AGCATGCAGAAGAGAGGGCGGACCTTCTTATCTTCACGGGAGGTCTCGGACCGACCAAGGATGATCTGACCAAAGAGACC
ATTGCAAGGAGTCTGGGTGTCAGCCTCTCCATGGATGAAGAAGCCATGGACTCCATCAGGGCTTATTTCGAAAAAGTCGG
CAGGGTGATGACTCCCAACAACGAAAAGCAGGCACTGATTCTCGAAGGTTCGGTACCATTGAAAAATGATTTCGGCATGG
CACCCGGTATGGTGTTTCAACAGTCCGGGAAAGCATATATCCTGCTACCTGGCCCGCCTTCTGAGATGAGGCCGATGTTC
AGTACGTACGGGGTTCCTGCCGTCATGGGCCTCATGAAACGAAAAGAAGTGATCCATTCCCGTGTACTTCGATTCTTCGG
GATAGGGGAGTCGCAGCTCGAAGCCGACCTTGAAGAACTCATCGACCGGCAGACGAATCCGACGATCGCACCTCTTGCCG
GGGACGGAGAGGTTACCTTGCGATTGACGGCAAAGCACGAGTCAAAAGATGTCGCAGAGACTCTCTTGAATGAGTTGGAA
TCGGAAATTCGGCAAACAGTCGGGGAGTACCTATACGGATACGACCAGGACTCCCTTGAGGGGGTGGGCTTCAGGCTCCT
GAAAGAAAAAGGCCTTACACTTGCTGCAGCTGAAAGCCTCACGGCAGGCTTGTTTCAATCCAGCCTCGCTTCGATCGCAG
GCGCTTCTTCCGTCCTTGAGGGGGGAGTGGTCTGCTATCAGGATTCTGTTAAGAGGGATGTGCTGAACGTACGGGAGGAA
ACGTTGAAGAATCACGGTGCGGTCAGTCGTGAATGCGCCATCGAGCTTGCGGCCAATGTGAGGACCTTGTTCAAATCCGA
TATAGGCATCAGTTTCACTGGTGTAGCAGGACCCGAAGCGCAAGGGGATCTGCCTCCTGGAACCGTTTGGATCGGCATCG
CTTCAGGTGATGGAGAGCCGAGGGCATACAAGCTCACACTGGCTGGAAGCCGAAACGGGAATCGCAGCCGGACAGTAAAA
TACGGGTGGCATTACTTGGTGAAGGAATACAAAGCATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(258-407)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

61.823

98.544

0.609
  cinA Streptococcus mutans UA159

47.343

100

0.476
  cinA Streptococcus mitis SK321

46.651

100

0.473
  cinA Streptococcus mitis NCTC 12261

46.172

100

0.468
  cinA Streptococcus pneumoniae TIGR4

45.933

100

0.466
  cinA Streptococcus pneumoniae Rx1

45.933

100

0.466
  cinA Streptococcus pneumoniae R6

45.933

100

0.466
  cinA Streptococcus pneumoniae D39

45.694

100

0.464
  cinA Streptococcus suis isolate S10

41.363

99.757

0.413