Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   K6K15_RS04325 Genome accession   NZ_CP081851
Coordinates   870826..872067 (+) Length   413 a.a.
NCBI ID   WP_305015444.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain XJ-003     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 865826..877067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6K15_RS04305 (K6K15_04285) - 866826..868118 (+) 1293 WP_004469407.1 pitrilysin family protein -
  K6K15_RS04310 (K6K15_04290) - 868118..868846 (+) 729 WP_003569514.1 SDR family oxidoreductase -
  K6K15_RS04315 (K6K15_04295) - 868933..869862 (+) 930 WP_003564169.1 helix-turn-helix domain-containing protein -
  K6K15_RS04320 (K6K15_04300) pgsA 869859..870452 (+) 594 WP_003569518.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  K6K15_RS04325 (K6K15_04305) cinA 870826..872067 (+) 1242 WP_305015444.1 competence/damage-inducible protein A Machinery gene
  K6K15_RS04330 (K6K15_04310) recA 872124..873185 (+) 1062 WP_003574281.1 recombinase RecA Machinery gene
  K6K15_RS04335 (K6K15_04315) rny 873487..875058 (+) 1572 WP_003657913.1 ribonuclease Y -
  K6K15_RS04340 (K6K15_04320) - 875152..875802 (-) 651 WP_305015445.1 YigZ family protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44284.61 Da        Isoelectric Point: 6.0028

>NTDB_id=597742 K6K15_RS04325 WP_305015444.1 870826..872067(+) (cinA) [Lacticaseibacillus paracasei strain XJ-003]
MQAEIIAVGTEILMGQITNTNGAYMAKQLTALGIDSYHQQVVGDNGPRLEEAIKLAESRSNLVILIGGLGPTPDDLTKQT
LAAHLNRKLVEDPDAMAKLQARAKQQQRPMTPNNQLQAMYPEGADILVNRVGLAVGAWIVNGQHTYVLLPGPPKEFVPMV
DHELLPRLAKWSGHAEVMVSRVLRFFGIGESQLVTDLDDLIANQTDPTIATYIKDHEVTVRVTASGATEKDADAKLEPMV
GAIMDRDGQYFYGYGDDNSLAKELVKTLAANDMQITAAESLTAGAFQAALGDVPGVSTYFKGGFVTYSLATKAAFLAIDA
RELAAHGVVSAFTAKAMAEHARRKAAADISVSFTGVAGPDTLEGQPAGTIWIGLARRGQLPEAHVYHFPGGRNDVRQRAV
MTGMMLALRALQA

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=597742 K6K15_RS04325 WP_305015444.1 870826..872067(+) (cinA) [Lacticaseibacillus paracasei strain XJ-003]
ATGCAAGCAGAGATTATTGCTGTCGGGACAGAGATCCTGATGGGACAGATTACTAACACAAATGGTGCCTATATGGCTAA
GCAACTGACAGCACTGGGTATTGATAGCTACCATCAACAGGTGGTGGGAGACAACGGTCCGCGACTTGAGGAGGCCATTA
AGTTGGCGGAAAGTCGCAGTAATTTAGTTATTTTGATTGGCGGGTTAGGACCGACACCAGATGATCTGACCAAGCAAACA
TTGGCAGCGCACTTGAACCGCAAATTGGTTGAAGATCCTGACGCTATGGCTAAATTACAGGCGCGCGCCAAGCAACAGCA
GCGGCCAATGACGCCTAATAATCAATTACAGGCCATGTATCCGGAAGGCGCCGATATTTTGGTCAATCGGGTTGGCTTAG
CGGTTGGTGCGTGGATCGTCAATGGGCAGCACACCTATGTCTTATTGCCGGGACCACCCAAGGAATTCGTTCCGATGGTT
GATCATGAACTGCTGCCGCGGCTAGCAAAATGGAGCGGCCACGCGGAAGTTATGGTCAGCCGGGTCTTACGGTTCTTTGG
CATTGGCGAATCGCAACTAGTGACAGATCTGGACGACTTGATTGCCAACCAAACCGATCCGACCATTGCAACTTATATCA
AGGATCATGAGGTGACGGTGCGCGTCACTGCCAGTGGCGCTACCGAAAAAGACGCTGATGCAAAGTTAGAACCAATGGTC
GGTGCCATCATGGATCGTGATGGTCAATATTTTTACGGCTACGGTGACGACAATAGTTTGGCAAAAGAGCTTGTGAAGAC
GCTTGCGGCAAATGATATGCAAATTACTGCAGCTGAGAGTTTGACTGCCGGCGCATTTCAAGCAGCGTTAGGCGATGTGC
CGGGGGTATCCACTTATTTTAAGGGCGGTTTTGTCACTTACTCACTTGCAACAAAGGCCGCTTTTTTGGCAATTGATGCT
CGCGAATTAGCGGCACACGGAGTTGTCAGCGCATTTACAGCCAAGGCGATGGCTGAACATGCTCGGCGTAAGGCAGCGGC
GGATATAAGTGTCAGCTTTACCGGCGTTGCCGGTCCAGACACGCTGGAAGGACAGCCTGCTGGTACGATTTGGATCGGTT
TAGCGCGGCGCGGCCAACTGCCTGAAGCACATGTTTACCATTTTCCTGGCGGTCGCAATGATGTTCGGCAGCGTGCTGTG
ATGACTGGTATGATGCTTGCATTAAGGGCGCTGCAGGCCTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

51.415

100

0.528
  cinA Streptococcus mitis SK321

51.3

100

0.525
  cinA Streptococcus pneumoniae TIGR4

51.179

100

0.525
  cinA Streptococcus mutans UA159

51.932

100

0.521
  cinA Streptococcus pneumoniae Rx1

50.711

100

0.518
  cinA Streptococcus pneumoniae R6

50.711

100

0.518
  cinA Streptococcus pneumoniae D39

50.474

100

0.516
  cinA Bacillus subtilis subsp. subtilis str. 168

44.769

99.516

0.446
  cinA Streptococcus suis isolate S10

42.063

91.525

0.385