Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AW27_RS22090 Genome accession   NZ_CP097800
Coordinates   5025032..5025700 (+) Length   222 a.a.
NCBI ID   WP_030649987.1    Uniprot ID   A0ABQ3P0H1
Organism   Streptomyces sp. PCS3-D2 isolate P1     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5020032..5030700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AW27_RS22060 (AW27_022030) - 5021184..5021639 (+) 456 WP_037923714.1 HD domain-containing protein -
  AW27_RS22065 (AW27_022035) - 5021795..5021989 (+) 195 WP_037923717.1 hypothetical protein -
  AW27_RS22080 (AW27_022050) tig 5022652..5024046 (+) 1395 WP_037923720.1 trigger factor -
  AW27_RS22085 (AW27_022055) - 5024358..5024975 (+) 618 WP_030760907.1 ATP-dependent Clp protease proteolytic subunit -
  AW27_RS22090 (AW27_022060) clpP 5025032..5025700 (+) 669 WP_030649987.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AW27_RS22095 (AW27_022065) clpX 5025854..5027140 (+) 1287 WP_030840753.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  AW27_RS22100 (AW27_022070) - 5027204..5028142 (-) 939 WP_037923726.1 hypothetical protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24501.91 Da        Isoelectric Point: 4.6762

>NTDB_id=596535 AW27_RS22090 WP_030649987.1 5025032..5025700(+) (clpP) [Streptomyces sp. PCS3-D2 isolate P1]
MVNTQMQNNFSASGLYSGPQVDNRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPD
RDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSGGTGREQLSDL
EIAANEILRMRDQLETMLAKHSTTPIEKIRDDIERDKILTAEDALAYGLIDQIISTRKSNKL

Nucleotide


Download         Length: 669 bp        

>NTDB_id=596535 AW27_RS22090 WP_030649987.1 5025032..5025700(+) (clpP) [Streptomyces sp. PCS3-D2 isolate P1]
ATGGTGAACACCCAGATGCAGAACAACTTCTCCGCGAGCGGCCTCTACTCCGGCCCGCAGGTGGACAACCGCTACGTCAT
CCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGATCT
TCCTCGGCGTGCAGATCGACGACGCCTCGGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCGGAC
CGCGACATCTCGATCTACATCAACAGCCCCGGCGGCTCCTTCACCGCGCTGACGGCGATCTACGACACGATGCAGTTCGT
GAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGGTCCTGCTCGCCGCCGGCACCCCCGGCA
AGCGCATGGCCCTGCCCAACGCCCGCGTGCTGATCCACCAGCCCTCCGGCGGCACCGGCCGCGAGCAGCTCTCGGACCTG
GAGATCGCGGCCAACGAGATCCTGCGCATGCGCGACCAGCTGGAGACCATGCTGGCCAAGCACTCCACGACGCCGATCGA
AAAGATCCGCGACGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCCCTCGCGTACGGCCTGATCGACCAGATCA
TCTCCACCCGCAAGAGCAACAAGCTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(36-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.041

88.288

0.459
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

84.685

0.423
  clpP Streptococcus thermophilus LMD-9

46.392

87.387

0.405
  clpP Streptococcus thermophilus LMG 18311

46.392

87.387

0.405
  clpP Streptococcus pyogenes MGAS315

47.368

85.586

0.405
  clpP Streptococcus pyogenes JRS4

47.368

85.586

0.405
  clpP Streptococcus mutans UA159

46.842

85.586

0.401
  clpP Streptococcus pneumoniae Rx1

45.408

88.288

0.401
  clpP Streptococcus pneumoniae D39

45.408

88.288

0.401
  clpP Streptococcus pneumoniae TIGR4

45.408

88.288

0.401
  clpP Streptococcus pneumoniae R6

45.408

88.288

0.401
  clpP Lactococcus lactis subsp. cremoris KW2

45.55

86.036

0.392
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.503

86.036

0.383