Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K3G22_RS17035 Genome accession   NZ_CP080635
Coordinates   3839396..3840661 (+) Length   421 a.a.
NCBI ID   WP_011787902.1    Uniprot ID   A0A6N3J110
Organism   Shewanella putrefaciens strain YZ-J     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3834396..3845661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3G22_RS17020 (K3G22_17020) nadC 3834986..3835873 (+) 888 WP_011787905.1 carboxylating nicotinate-nucleotide diphosphorylase -
  K3G22_RS17025 (K3G22_17025) - 3836757..3837230 (+) 474 WP_025008133.1 type IV pilin protein -
  K3G22_RS17030 (K3G22_17030) pilB 3837305..3839014 (+) 1710 WP_061783195.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K3G22_RS17035 (K3G22_17035) pilC 3839396..3840661 (+) 1266 WP_011787902.1 type II secretion system F family protein Machinery gene
  K3G22_RS17040 (K3G22_17040) pilD 3840827..3841753 (+) 927 WP_025008132.1 A24 family peptidase Machinery gene
  K3G22_RS17045 (K3G22_17045) coaE 3842096..3842713 (+) 618 WP_128090233.1 dephospho-CoA kinase -
  K3G22_RS17050 (K3G22_17050) zapD 3842706..3843440 (+) 735 WP_011787899.1 cell division protein ZapD -
  K3G22_RS17055 (K3G22_17055) yacG 3843598..3843807 (+) 210 WP_011920039.1 DNA gyrase inhibitor YacG -
  K3G22_RS17060 (K3G22_17060) mutT 3843859..3844263 (+) 405 WP_011787897.1 8-oxo-dGTP diphosphatase MutT -
  K3G22_RS17065 (K3G22_17065) - 3844812..3845348 (+) 537 WP_011787896.1 thioredoxin family protein -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46325.74 Da        Isoelectric Point: 10.2387

>NTDB_id=594598 K3G22_RS17035 WP_011787902.1 3839396..3840661(+) (pilC) [Shewanella putrefaciens strain YZ-J]
MATATTVKKPRPKKIEPKSQPKIFTFEWKGTNRDGKKTGGELKGATVAEVKSQLKSQGVNPKVVRKKASPFFARNPDIKP
MDIAMATRQIATMLAAGVPLVTTIEILGRGHEKLKMRDLLGTILSEIQSGIPLSDALRPHRRYFDDLYVDLVAAGEHSGS
LDAVFDRIATYREKAEQLKSKIKKAMFYPAAVVVVAILVTTLLLLFVVPQFEDIFKGFGAELPAFTQMIIGISRWLQSSW
YLFFIAITVGIWLFVRAHRNSQMVRDRVDEFVLKIPVIGEILHKAAMARFSRTLATTFAAGVPLIDGMESAAGASGNAVY
RKALLKVRQEVMAGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGT
LVGGLIVGMYLPIFQMGNVVG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=594598 K3G22_RS17035 WP_011787902.1 3839396..3840661(+) (pilC) [Shewanella putrefaciens strain YZ-J]
ATGGCTACGGCAACGACAGTAAAAAAGCCTCGCCCAAAGAAGATTGAGCCCAAAAGCCAACCAAAGATTTTTACCTTTGA
ATGGAAAGGCACTAACCGCGATGGCAAAAAAACGGGTGGTGAGTTAAAGGGTGCAACGGTTGCAGAGGTAAAAAGCCAGC
TCAAATCCCAAGGAGTAAATCCTAAAGTCGTACGAAAAAAAGCATCTCCTTTCTTTGCCCGTAATCCTGATATCAAGCCC
ATGGATATCGCGATGGCAACTCGCCAGATAGCGACTATGCTGGCCGCCGGCGTTCCGCTTGTGACCACAATAGAAATATT
GGGGCGTGGCCATGAAAAACTCAAAATGCGCGATCTGTTAGGGACAATTCTGTCAGAGATTCAATCGGGTATTCCGTTAT
CAGATGCCCTGCGCCCCCATAGGCGTTATTTTGATGATCTCTATGTAGACTTAGTGGCAGCAGGTGAACACTCAGGTTCG
CTCGATGCGGTATTTGATCGTATTGCAACCTATAGAGAAAAAGCCGAGCAGCTAAAATCTAAAATCAAAAAAGCCATGTT
TTATCCCGCCGCCGTTGTGGTCGTCGCTATTTTAGTGACCACATTGTTATTACTCTTTGTCGTACCTCAGTTCGAAGATA
TTTTTAAAGGATTTGGCGCTGAACTCCCCGCCTTTACACAGATGATCATTGGTATCTCGCGCTGGTTGCAAAGCTCTTGG
TATCTCTTTTTCATAGCGATTACAGTGGGGATTTGGTTATTTGTCCGTGCCCATCGCAATTCACAAATGGTTCGTGACCG
TGTTGATGAATTTGTACTTAAGATCCCTGTTATCGGCGAAATTCTGCATAAGGCAGCCATGGCGCGCTTTTCTCGTACCT
TAGCCACCACCTTTGCGGCAGGTGTGCCGTTGATTGATGGGATGGAATCCGCAGCGGGAGCATCGGGTAATGCCGTATAT
CGCAAAGCACTGTTAAAAGTACGCCAAGAGGTGATGGCTGGTATGCAAATGAACGTCGCGATGCGTACTACGGGTTTGTT
CCCCGATATGCTGATCCAAATGGTGATGATTGGTGAAGAGTCTGGATCGCTAGATAATATGCTAAATAAGGTGGCTAATA
TTTATGAAATGCAAGTCGATGACGCTGTGGATGGTTTATCGAGTCTAATTGAACCCATTATGATGGTGGTGATTGGCACC
CTTGTGGGTGGTTTAATTGTGGGAATGTATCTCCCTATCTTCCAAATGGGAAATGTCGTAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)

Type II secretion system (T2SS), protein F (T2SSF)

(87-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N3J110

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.684

93.824

0.513
  pilC Acinetobacter baylyi ADP1

50.882

94.299

0.48
  pilC Legionella pneumophila strain ERS1305867

49.752

95.962

0.477
  pilC Acinetobacter baumannii D1279779

50.251

94.537

0.475
  pilC Vibrio cholerae strain A1552

46.867

94.774

0.444
  pilC Vibrio campbellii strain DS40M4

44.499

97.15

0.432
  pilG Neisseria gonorrhoeae MS11

41.294

95.487

0.394
  pilG Neisseria meningitidis 44/76-A

41.191

95.724

0.394