Detailed information NTG0594599

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: K3G22_RS17040
• Genome accession: NZ_CP080635
• Coordinates: 3840827..3841753 (+)
• Length: 308 a.a.
• NCBI ID: WP_025008132.1
• Uniprot ID: -
• Organism: Shewanella putrefaciens strain YZ-J
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3835827..3846753

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K3G22_RS17025 (K3G22_17025)	-	3836757..3837230 (+)	474	WP_025008133.1	type IV pilin protein	-
K3G22_RS17030 (K3G22_17030)	pilB	3837305..3839014 (+)	1710	WP_061783195.1	type IV-A pilus assembly ATPase PilB	Machinery gene
K3G22_RS17035 (K3G22_17035)	pilC	3839396..3840661 (+)	1266	WP_011787902.1	type II secretion system F family protein	Machinery gene
K3G22_RS17040 (K3G22_17040)	pilD	3840827..3841753 (+)	927	WP_025008132.1	A24 family peptidase	Machinery gene
K3G22_RS17045 (K3G22_17045)	coaE	3842096..3842713 (+)	618	WP_128090233.1	dephospho-CoA kinase	-
K3G22_RS17050 (K3G22_17050)	zapD	3842706..3843440 (+)	735	WP_011787899.1	cell division protein ZapD	-
K3G22_RS17055 (K3G22_17055)	yacG	3843598..3843807 (+)	210	WP_011920039.1	DNA gyrase inhibitor YacG	-
K3G22_RS17060 (K3G22_17060)	mutT	3843859..3844263 (+)	405	WP_011787897.1	8-oxo-dGTP diphosphatase MutT	-
K3G22_RS17065 (K3G22_17065)	-	3844812..3845348 (+)	537	WP_011787896.1	thioredoxin family protein	-
K3G22_RS17070 (K3G22_17070)	-	3845616..3846542 (-)	927	WP_061783194.1	exopolyphosphatase	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34356.68 Da
• Isoelectric Point: 6.5934

>NTDB_id=594599 K3G22_RS17040 WP_025008132.1 3840827..3841753(+) (pilD) [Shewanella putrefaciens strain YZ-J]
MTEFITLLGQSFEQSPWLFVTLSFIFAATIGSFLNVVIHRLPIMMKREWQQECNQYLQEYHADIVNQVGIDRLNKPIDSY
PEKYNIVVPGSACPQCKTAIKPWHNLPVLGWLILRGKCAACHAPISTRYPIIELITGLLIAALAWHFGPSWQFVFASLLT
FVLIALTGIDLDEMLLPDQLTLPLLWLGLLLNLHHTFASPTDAIIGAAAGYLSLWSIFWVFKLLTGKEGMGYGDFKLLAV
FGAWLGWQMLPLVILLSSLVGAVVGIGMIISKRNQMDNPIPFGPYIAAAGWIALVWGNTIIDWYLGTL

Nucleotide

• Length: 927 bp

>NTDB_id=594599 K3G22_RS17040 WP_025008132.1 3840827..3841753(+) (pilD) [Shewanella putrefaciens strain YZ-J]
ATGACTGAATTTATCACTTTATTAGGCCAATCTTTTGAACAGAGTCCTTGGCTCTTCGTCACCTTAAGCTTTATTTTTGC
CGCGACTATTGGCAGTTTTCTGAATGTGGTCATCCACCGACTCCCTATCATGATGAAGCGTGAATGGCAGCAGGAATGTA
ATCAATATTTACAGGAATACCATGCGGATATCGTTAACCAAGTCGGTATCGATAGGCTTAATAAACCCATAGATAGCTAT
CCCGAAAAGTACAATATTGTGGTGCCAGGCTCAGCTTGCCCTCAGTGTAAAACCGCCATCAAACCTTGGCATAATTTGCC
AGTTCTCGGTTGGTTAATCCTTAGGGGGAAATGCGCCGCCTGTCATGCACCTATCTCGACCCGTTATCCGATTATTGAAT
TAATCACAGGTTTACTGATCGCAGCTCTAGCTTGGCATTTTGGCCCCAGTTGGCAATTTGTTTTTGCCTCTTTACTCACC
TTTGTATTGATTGCGCTGACTGGTATAGATCTGGATGAAATGTTATTACCGGATCAGTTAACACTGCCCCTACTGTGGCT
TGGGCTATTACTCAATTTACACCATACCTTTGCTAGCCCAACGGATGCCATTATCGGTGCAGCCGCAGGCTATTTAAGCC
TATGGTCAATTTTCTGGGTGTTTAAGTTACTCACAGGTAAAGAAGGTATGGGCTATGGCGACTTTAAACTGTTGGCCGTT
TTTGGTGCTTGGCTTGGCTGGCAAATGTTGCCACTGGTGATTTTACTCTCCTCATTAGTGGGTGCTGTTGTGGGCATTGG
CATGATTATCAGCAAACGTAATCAGATGGATAACCCTATTCCCTTTGGCCCTTATATTGCCGCCGCAGGCTGGATTGCAC
TGGTTTGGGGAAACACTATCATCGACTGGTATTTAGGGACACTATAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-147)

• Type IV leader peptidase family (Peptidase_A24) (159-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.156	97.727	0.519
pilD	Vibrio campbellii strain DS40M4	51.333	97.403	0.5
pilD	Acinetobacter baumannii D1279779	48.789	93.831	0.458
pilD	Acinetobacter nosocomialis M2	48.789	93.831	0.458
pilD	Neisseria gonorrhoeae MS11	43.448	94.156	0.409