Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ABVS_RS05270 Genome accession   NZ_CP080576
Coordinates   1072807..1074975 (-) Length   722 a.a.
NCBI ID   WP_222112336.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain VS15     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1067807..1079975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVS_RS05255 (ABVS_1100) - 1070237..1071115 (-) 879 WP_222112334.1 hypothetical protein -
  ABVS_RS05260 (ABVS_1101) aroB 1071126..1072205 (-) 1080 WP_222112335.1 3-dehydroquinate synthase -
  ABVS_RS05265 (ABVS_1102) aroK 1072234..1072770 (-) 537 WP_005101380.1 shikimate kinase AroK -
  ABVS_RS05270 (ABVS_1103) pilQ 1072807..1074975 (-) 2169 WP_222112336.1 type IV pilus secretin PilQ family protein Machinery gene
  ABVS_RS05275 (ABVS_1104) pilP 1074993..1075520 (-) 528 WP_004732447.1 pilus assembly protein PilP Machinery gene
  ABVS_RS05280 (ABVS_1105) comO 1075520..1076242 (-) 723 WP_005263890.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABVS_RS05285 (ABVS_1106) comN 1076239..1076877 (-) 639 WP_004281141.1 PilN domain-containing protein Machinery gene
  ABVS_RS05290 (ABVS_1107) pilM 1076877..1077935 (-) 1059 WP_005263891.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 722 a.a.        Molecular weight: 78664.98 Da        Isoelectric Point: 5.0131

>NTDB_id=594182 ABVS_RS05270 WP_222112336.1 1072807..1074975(-) (pilQ) [Acinetobacter lwoffii strain VS15]
MNKSIKEFIFGDVNTMNRVFRQFSMGAVAIAVMQAASAQVSMTNVVPMQLPGQGTEIRVMFNGLPPQPQAYQLESPSRLI
LDFDKAQQNLKQSSIPVATREASSVDVTSDAQRARLTVNLTEAGAFTTRVEGNTFILKINSATPVAIAQPVQQQSAQGIS
NIGFQRGVQGEGQVVIDLLGNNTPVDVQQQGTKVIVRTLGSKIPAHLTRRLNVTDFATPVSSVDAVNQNGSGVITIQSAE
SYEYMAYQTDNKLTISLKRPEAKSPLRPKTVNYSGKKISLDFQDIEVRRVLQLLADFTDINMVAADSVQGNITLRLKEVP
WDQALDIVLKTKNLDKRRNGNVIWIAPVTELIKAEEEEAKAIKQSVALAPIQTEYMQLSYAKAADIEKLITQNKGASSSG
SSSNTTNNDERESLLSSRGSVSIDARTNTIIVNDTQPFIDKIRNMVDLLDVQVKQVMVEARIVRATTDFTKEMGVKWGIL
SQGITNNNNLLVGGSDTTLWDLREPELDSETGRWTYDIQRPDNLNVDLGVTSSGASRIAFGLISLSDFMLDLELSALQAD
GYGEVISTPKVLTADKQKATVASGSQIPYQSAEGGGANAVSTTEFIDATLSLDVTPSITPDGKVQMELNITSDSPGNPTP
TGQLTINKNQITTNVLVDNGETVVLGGIFEQETRNAQTKVPFLGDIPYVGRLFRKDLKSDNKRELLIFVTPRIVNDSVSR
NH

Nucleotide


Download         Length: 2169 bp        

>NTDB_id=594182 ABVS_RS05270 WP_222112336.1 1072807..1074975(-) (pilQ) [Acinetobacter lwoffii strain VS15]
ATGAATAAGAGTATTAAAGAATTTATTTTTGGGGATGTTAATACAATGAATCGTGTGTTTCGTCAGTTTTCCATGGGTGC
TGTTGCGATTGCGGTGATGCAAGCGGCTAGTGCACAGGTTTCAATGACCAATGTAGTACCCATGCAGCTTCCTGGACAAG
GAACTGAGATTCGGGTGATGTTCAATGGTTTGCCACCACAACCACAGGCCTACCAATTAGAATCACCGTCACGTTTGATT
CTGGACTTTGACAAGGCACAACAGAATTTAAAACAAAGCAGTATTCCGGTGGCAACACGTGAAGCCAGTTCAGTGGATGT
CACTTCGGATGCTCAGCGGGCACGTCTGACGGTAAACTTGACCGAGGCAGGAGCCTTTACGACTCGCGTGGAAGGCAATA
CCTTTATTCTTAAAATTAACTCGGCAACTCCTGTAGCCATAGCTCAACCTGTGCAGCAACAGTCAGCTCAGGGTATCAGT
AATATTGGTTTCCAGCGCGGTGTGCAAGGTGAAGGCCAGGTCGTTATTGATCTATTAGGGAATAATACTCCTGTTGATGT
ACAGCAGCAGGGTACCAAAGTCATTGTACGCACTTTAGGGAGCAAGATTCCTGCACATTTGACCCGCCGTCTTAATGTGA
CAGATTTCGCGACTCCGGTATCGAGTGTGGATGCTGTGAATCAAAATGGCTCAGGCGTGATTACGATTCAGTCTGCGGAA
AGTTATGAATATATGGCTTATCAGACTGATAACAAGCTAACCATCAGTTTGAAACGTCCGGAAGCCAAGAGCCCATTACG
TCCTAAAACCGTCAATTATTCGGGTAAGAAAATCTCTTTGGATTTTCAGGATATCGAAGTCCGTCGTGTTCTACAGCTCT
TAGCCGATTTCACCGATATCAATATGGTGGCTGCAGATAGTGTACAAGGCAATATTACTTTGCGCTTGAAAGAGGTACCT
TGGGATCAGGCGCTGGATATTGTGCTGAAAACCAAAAATCTGGATAAACGGCGCAATGGCAATGTGATCTGGATCGCACC
AGTTACAGAGCTGATAAAGGCTGAAGAGGAAGAAGCTAAGGCGATTAAGCAGAGTGTTGCACTTGCGCCTATCCAAACGG
AATATATGCAGCTCAGTTATGCCAAAGCCGCTGATATTGAGAAACTGATTACGCAGAATAAAGGCGCATCTAGTTCAGGT
AGTTCGAGTAACACTACAAATAATGATGAGAGAGAAAGCTTATTGAGTTCACGTGGCTCTGTGTCTATTGATGCACGAAC
CAATACTATTATTGTGAATGATACCCAGCCTTTTATTGATAAAATCCGTAATATGGTAGATCTGCTCGATGTACAGGTAA
AGCAGGTAATGGTTGAAGCACGTATTGTGCGAGCTACCACGGACTTCACCAAAGAAATGGGAGTGAAGTGGGGGATTCTG
TCTCAAGGAATTACCAACAATAATAATCTTCTGGTCGGTGGTAGTGACACGACGTTATGGGATCTTAGAGAGCCAGAACT
AGATAGTGAAACAGGTCGCTGGACCTACGATATTCAAAGACCAGATAACTTAAATGTGGATTTGGGGGTAACCAGTTCAG
GTGCCAGTCGTATTGCCTTTGGTTTGATCAGCCTTTCTGATTTTATGCTGGATCTTGAGCTTTCTGCACTTCAGGCAGAT
GGCTATGGTGAGGTGATTTCTACCCCTAAAGTACTGACTGCAGACAAGCAGAAAGCAACTGTTGCCTCTGGTTCTCAAAT
TCCGTATCAGTCAGCAGAGGGTGGTGGTGCGAATGCAGTATCTACTACGGAATTTATTGATGCTACGCTAAGTCTGGATG
TCACACCAAGCATTACGCCAGATGGCAAAGTACAGATGGAACTCAATATTACCAGTGACTCACCGGGTAACCCGACACCG
ACTGGACAGCTCACTATTAACAAAAACCAGATCACTACCAATGTCTTGGTGGACAATGGCGAAACCGTGGTTCTAGGCGG
TATTTTTGAGCAAGAAACCCGTAATGCACAAACTAAGGTACCTTTCCTGGGGGATATTCCTTATGTAGGACGTTTATTCC
GTAAAGATTTAAAGTCGGATAATAAACGTGAGCTACTGATTTTCGTTACACCTCGAATTGTTAATGACAGTGTTTCAAGA
AATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(305-347)

Bacterial type II/III secretion system short domain (Secretin_N)

(375-455)

AMIN domain (AMIN)

(55-136)

Bacterial type II and III secretion system protein (Secretin)

(556-714)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

73.699

100

0.745
  pilQ Acinetobacter baumannii strain A118

73.562

100

0.744
  comQ Acinetobacter baylyi ADP1

70.572

99.307

0.701
  pilQ Pseudomonas aeruginosa PAK

41.439

96.26

0.399
  pilQ Legionella pneumophila strain Lp02

37.465

98.338

0.368
  pilQ Legionella pneumophila strain ERS1305867

37.5

97.507

0.366