Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   ABVS_RS05275 Genome accession   NZ_CP080576
Coordinates   1074993..1075520 (-) Length   175 a.a.
NCBI ID   WP_004732447.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain VS15     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1069993..1080520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVS_RS05255 (ABVS_1100) - 1070237..1071115 (-) 879 WP_222112334.1 hypothetical protein -
  ABVS_RS05260 (ABVS_1101) aroB 1071126..1072205 (-) 1080 WP_222112335.1 3-dehydroquinate synthase -
  ABVS_RS05265 (ABVS_1102) aroK 1072234..1072770 (-) 537 WP_005101380.1 shikimate kinase AroK -
  ABVS_RS05270 (ABVS_1103) pilQ 1072807..1074975 (-) 2169 WP_222112336.1 type IV pilus secretin PilQ family protein Machinery gene
  ABVS_RS05275 (ABVS_1104) pilP 1074993..1075520 (-) 528 WP_004732447.1 pilus assembly protein PilP Machinery gene
  ABVS_RS05280 (ABVS_1105) comO 1075520..1076242 (-) 723 WP_005263890.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABVS_RS05285 (ABVS_1106) comN 1076239..1076877 (-) 639 WP_004281141.1 PilN domain-containing protein Machinery gene
  ABVS_RS05290 (ABVS_1107) pilM 1076877..1077935 (-) 1059 WP_005263891.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19302.44 Da        Isoelectric Point: 7.1658

>NTDB_id=594183 ABVS_RS05275 WP_004732447.1 1074993..1075520(-) (pilP) [Acinetobacter lwoffii strain VS15]
MKNIKITSALTLGFLLLGCDSRIDAVNQEMANIRNQPPLPIEPAPDFMPVETFNYAAHQIKSPFLPSSLAAELKIMAGKR
VYPNLSRQLQPLESYPLETLTMKGSMRNQAGQILALIQTPDGEVERIQRGSYMGLNHGRVVGITPTQIDLIEIIPDGREG
YVERPRSLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=594183 ABVS_RS05275 WP_004732447.1 1074993..1075520(-) (pilP) [Acinetobacter lwoffii strain VS15]
ATGAAGAACATTAAAATTACTTCAGCTTTAACGCTTGGGTTTTTATTATTGGGATGTGATTCACGCATTGATGCAGTCAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCTTTACCGATTGAACCTGCGCCTGATTTTATGCCAGTTGAAACCTTCA
ACTATGCAGCACATCAGATCAAAAGTCCTTTTTTACCAAGCTCTCTGGCTGCCGAACTGAAAATTATGGCGGGGAAACGG
GTTTATCCAAACCTATCACGTCAATTGCAACCGCTAGAAAGTTATCCGCTCGAAACGTTGACCATGAAAGGCAGCATGCG
CAATCAGGCAGGACAGATTCTGGCTTTAATCCAGACACCTGATGGTGAGGTTGAGCGGATTCAACGTGGTAGCTATATGG
GACTTAATCATGGTCGTGTGGTTGGAATTACACCAACACAGATCGATTTGATTGAGATTATTCCAGATGGCCGTGAGGGA
TATGTGGAACGTCCGCGAAGTTTGGTTCTTATCGGGCCGGCGCCATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

76.571

100

0.766
  comL Acinetobacter baylyi ADP1

72.781

96.571

0.703