Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   ABVS_RS05285 Genome accession   NZ_CP080576
Coordinates   1076239..1076877 (-) Length   212 a.a.
NCBI ID   WP_004281141.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain VS15     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1071239..1081877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVS_RS05265 (ABVS_1102) aroK 1072234..1072770 (-) 537 WP_005101380.1 shikimate kinase AroK -
  ABVS_RS05270 (ABVS_1103) pilQ 1072807..1074975 (-) 2169 WP_222112336.1 type IV pilus secretin PilQ family protein Machinery gene
  ABVS_RS05275 (ABVS_1104) pilP 1074993..1075520 (-) 528 WP_004732447.1 pilus assembly protein PilP Machinery gene
  ABVS_RS05280 (ABVS_1105) comO 1075520..1076242 (-) 723 WP_005263890.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABVS_RS05285 (ABVS_1106) comN 1076239..1076877 (-) 639 WP_004281141.1 PilN domain-containing protein Machinery gene
  ABVS_RS05290 (ABVS_1107) pilM 1076877..1077935 (-) 1059 WP_005263891.1 pilus assembly protein PilM Machinery gene
  ABVS_RS05295 (ABVS_1108) ponA 1078101..1080626 (+) 2526 WP_222112337.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23911.14 Da        Isoelectric Point: 4.9286

>NTDB_id=594185 ABVS_RS05285 WP_004281141.1 1076239..1076877(-) (comN) [Acinetobacter lwoffii strain VS15]
MARINLLPWRDELRIKRNNEFVAICVGALFLGLAAAGSTWFYYDHKLQDQEQANQLIQSTNQNLDVQLKALEGLQEQRNA
IVERMKLIQGLQTQRPIAVHLIDEIVRVTPSNMYITKFQRIGDKFTIEGRAESPNTVAELLRNLEASSWYRNAFMNAFLV
AEEAKEKAPSSIIPRVEESYGSFTVTVDLDQIAQPVLNEEQQAVATTTGASS

Nucleotide


Download         Length: 639 bp        

>NTDB_id=594185 ABVS_RS05285 WP_004281141.1 1076239..1076877(-) (comN) [Acinetobacter lwoffii strain VS15]
ATGGCAAGAATTAACTTACTTCCTTGGCGTGATGAGCTAAGAATTAAAAGAAATAATGAATTCGTGGCAATCTGCGTAGG
GGCGCTTTTCTTGGGATTAGCGGCAGCGGGTTCTACCTGGTTTTATTATGATCACAAGCTTCAGGATCAGGAACAGGCCA
ATCAGCTGATTCAAAGCACCAACCAGAATCTGGATGTGCAGTTAAAGGCGCTTGAGGGTTTGCAAGAACAGCGTAATGCG
ATTGTTGAACGGATGAAACTGATTCAGGGCTTGCAAACCCAGCGTCCGATTGCGGTGCATTTGATTGATGAAATTGTGCG
GGTGACCCCAAGCAATATGTATATCACCAAATTCCAGCGTATCGGCGACAAGTTCACCATTGAAGGTCGGGCTGAAAGTC
CAAATACGGTAGCAGAACTGCTCCGTAATCTGGAAGCTTCATCTTGGTATCGAAATGCCTTTATGAACGCTTTCCTGGTG
GCTGAAGAAGCAAAAGAAAAGGCGCCGAGCTCGATTATTCCACGTGTGGAAGAATCTTATGGCAGTTTTACTGTAACTGT
AGATCTGGATCAGATCGCTCAGCCAGTACTTAACGAAGAACAACAAGCAGTCGCTACAACTACGGGGGCATCATCATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Acinetobacter baylyi ADP1

66.986

98.585

0.66
  pilN Acinetobacter baumannii D1279779

70.984

91.038

0.646