Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K1X80_RS24510 Genome accession   NZ_CP080494
Coordinates   5452244..5453470 (+) Length   408 a.a.
NCBI ID   WP_198817571.1    Uniprot ID   -
Organism   Pseudomonas sp. So3.2b     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5447244..5458470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1X80_RS24485 (K1X80_24485) nadC 5448675..5449523 (+) 849 WP_057958406.1 carboxylating nicotinate-nucleotide diphosphorylase -
  K1X80_RS24490 (K1X80_24490) - 5449590..5449895 (-) 306 WP_057444407.1 DUF6388 family protein -
  K1X80_RS24500 (K1X80_24500) - 5450146..5451552 (-) 1407 WP_198817570.1 O-antigen ligase -
  K1X80_RS24505 (K1X80_24505) - 5451631..5452041 (-) 411 WP_057958404.1 pilin -
  K1X80_RS24510 (K1X80_24510) pilC 5452244..5453470 (+) 1227 WP_198817571.1 type II secretion system F family protein Machinery gene
  K1X80_RS24515 (K1X80_24515) pilD 5453473..5454345 (+) 873 WP_120734166.1 A24 family peptidase Machinery gene
  K1X80_RS24520 (K1X80_24520) coaE 5454342..5454965 (+) 624 WP_198830288.1 dephospho-CoA kinase -
  K1X80_RS24525 (K1X80_24525) yacG 5454962..5455165 (+) 204 WP_032861907.1 DNA gyrase inhibitor YacG -
  K1X80_RS24530 (K1X80_24530) - 5455162..5455377 (-) 216 WP_057441062.1 hypothetical protein -
  K1X80_RS24535 (K1X80_24535) - 5455441..5456130 (-) 690 WP_057441064.1 energy-coupling factor ABC transporter permease -
  K1X80_RS24540 (K1X80_24540) - 5456127..5456594 (-) 468 WP_120734168.1 FAD/FMN-containing dehydrogenase -
  K1X80_RS24545 (K1X80_24545) - 5456697..5457326 (+) 630 WP_057441069.1 DUF1780 domain-containing protein -
  K1X80_RS24550 (K1X80_24550) - 5457366..5457539 (+) 174 WP_057441071.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44170.87 Da        Isoelectric Point: 10.2214

>NTDB_id=593257 K1X80_RS24510 WP_198817571.1 5452244..5453470(+) (pilC) [Pseudomonas sp. So3.2b]
MNDVTVNPAPTATYAWEGTLGNGRKVSGETRGHSPAVIKAQLRRQGINPVRVQIRSSLLSGLRNPITPADVALFTRQLAT
LLKAGIPLLQAFDMIGEGFENRAMRTMVQGLKQEIAAGNSLTGALLKQPQCFNALYCSLIAAGEQAGTLETLLERVATHL
EKSQRLKARIKKAMTYPLVVLLVATLVSSILLIHVVPQFESLFAGIDTPLPRFTLLVIVLSEFMQSAWWMLLLAVAATTW
GIRRSYRRHSGFRLWLDAGLLKVPLAGTLLKKTAVARYARTLATTFAAGVPLAQALDSVAGAAGNERFKQAVTRMRQDVA
IGMQLNRTMTASGLFPGMAIQMTAIGEESGALDSMLEKVADHYETDVDNLVDNLTSLMEPLIMVVLGSIVGALVIAMYLP
IFQLGTAF

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=593257 K1X80_RS24510 WP_198817571.1 5452244..5453470(+) (pilC) [Pseudomonas sp. So3.2b]
ATGAATGATGTCACCGTAAACCCGGCCCCCACCGCCACCTACGCCTGGGAAGGCACCCTGGGCAATGGCCGCAAGGTGTC
CGGCGAAACCCGCGGGCATAGCCCGGCCGTGATCAAGGCCCAATTGCGCCGGCAAGGGATCAATCCGGTTCGGGTCCAGA
TACGCTCCAGCCTCCTGTCTGGCCTGCGCAACCCCATCACCCCAGCCGATGTTGCGCTGTTCACCCGCCAACTGGCGACC
CTGCTGAAGGCGGGAATCCCCCTGCTGCAAGCCTTCGACATGATCGGCGAAGGCTTTGAAAACCGGGCCATGCGCACAAT
GGTCCAGGGATTGAAGCAGGAGATTGCCGCCGGCAACAGCCTGACCGGCGCGTTATTGAAACAACCGCAGTGCTTCAACG
CCCTGTATTGCAGCCTGATCGCGGCCGGCGAACAGGCCGGCACCCTGGAAACCCTGCTGGAGCGGGTCGCCACACACCTG
GAAAAAAGCCAACGCCTCAAGGCCCGGATCAAGAAAGCCATGACCTATCCACTGGTGGTCCTGCTCGTGGCCACCCTGGT
CAGCAGTATCTTGCTGATCCACGTCGTGCCCCAGTTCGAAAGCCTGTTCGCCGGCATCGACACGCCGCTGCCGCGCTTTA
CCCTGCTGGTTATTGTGCTGTCCGAATTCATGCAAAGCGCGTGGTGGATGCTGTTGCTGGCCGTGGCGGCGACTACTTGG
GGCATACGTCGCAGCTATCGTCGACACAGTGGTTTTCGTCTGTGGCTGGACGCTGGTTTGTTGAAAGTGCCATTGGCAGG
CACACTGCTGAAAAAAACCGCTGTCGCCCGCTACGCTCGCACCCTCGCCACCACCTTTGCCGCCGGCGTACCGCTGGCAC
AGGCGTTGGATTCAGTGGCGGGAGCCGCCGGCAACGAACGCTTCAAACAAGCAGTCACGCGTATGCGCCAGGACGTAGCA
ATAGGAATGCAATTGAATCGAACCATGACCGCCAGCGGCCTGTTCCCTGGCATGGCGATCCAGATGACAGCCATCGGCGA
AGAATCGGGCGCACTGGACAGCATGCTGGAGAAGGTCGCCGACCATTATGAAACGGACGTCGACAACCTGGTGGACAACC
TGACCAGCCTGATGGAACCGCTGATCATGGTGGTGCTCGGCAGCATTGTCGGGGCGCTGGTGATCGCCATGTACCTGCCG
ATCTTCCAGCTCGGCACGGCGTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

97.059

0.556
  pilC Acinetobacter baylyi ADP1

52.405

96.814

0.507
  pilC Acinetobacter baumannii D1279779

51.263

97.059

0.498
  pilC Legionella pneumophila strain ERS1305867

47.395

98.775

0.468
  pilC Vibrio cholerae strain A1552

40.404

97.059

0.392
  pilG Neisseria gonorrhoeae MS11

39.594

96.569

0.382
  pilG Neisseria meningitidis 44/76-A

38.832

96.569

0.375
  pilC Vibrio campbellii strain DS40M4

38.168

96.324

0.368