Detailed information NTG0593258

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: K1X80_RS24515
• Genome accession: NZ_CP080494
• Coordinates: 5453473..5454345 (+)
• Length: 290 a.a.
• NCBI ID: WP_120734166.1
• Uniprot ID: -
• Organism: Pseudomonas sp. So3.2b
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5448473..5459345

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K1X80_RS24485 (K1X80_24485)	nadC	5448675..5449523 (+)	849	WP_057958406.1	carboxylating nicotinate-nucleotide diphosphorylase	-
K1X80_RS24490 (K1X80_24490)	-	5449590..5449895 (-)	306	WP_057444407.1	DUF6388 family protein	-
K1X80_RS24500 (K1X80_24500)	-	5450146..5451552 (-)	1407	WP_198817570.1	O-antigen ligase	-
K1X80_RS24505 (K1X80_24505)	-	5451631..5452041 (-)	411	WP_057958404.1	pilin	-
K1X80_RS24510 (K1X80_24510)	pilC	5452244..5453470 (+)	1227	WP_198817571.1	type II secretion system F family protein	Machinery gene
K1X80_RS24515 (K1X80_24515)	pilD	5453473..5454345 (+)	873	WP_120734166.1	A24 family peptidase	Machinery gene
K1X80_RS24520 (K1X80_24520)	coaE	5454342..5454965 (+)	624	WP_198830288.1	dephospho-CoA kinase	-
K1X80_RS24525 (K1X80_24525)	yacG	5454962..5455165 (+)	204	WP_032861907.1	DNA gyrase inhibitor YacG	-
K1X80_RS24530 (K1X80_24530)	-	5455162..5455377 (-)	216	WP_057441062.1	hypothetical protein	-
K1X80_RS24535 (K1X80_24535)	-	5455441..5456130 (-)	690	WP_057441064.1	energy-coupling factor ABC transporter permease	-
K1X80_RS24540 (K1X80_24540)	-	5456127..5456594 (-)	468	WP_120734168.1	FAD/FMN-containing dehydrogenase	-
K1X80_RS24545 (K1X80_24545)	-	5456697..5457326 (+)	630	WP_057441069.1	DUF1780 domain-containing protein	-
K1X80_RS24550 (K1X80_24550)	-	5457366..5457539 (+)	174	WP_057441071.1	DUF3094 family protein	-
K1X80_RS24555 (K1X80_24555)	-	5457600..5458898 (+)	1299	WP_057441073.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32068.11 Da
• Isoelectric Point: 7.3428

>NTDB_id=593258 K1X80_RS24515 WP_120734166.1 5453473..5454345(+) (pilD) [Pseudomonas sp. So3.2b]
MTLDLLLTLHPWLFVWASLVLGLIVGSFLNVLVWRLPKMLERDWRAQAHEILGLPPEPGGPTYNLLHPNSCCPHCSQPIR
PWQNIPVLSYLLLRGRCAQCHGSISPRYPLTELACGLLSAFIAWHYGFGWPAAGVLFLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLILNYFELYTTLPDALLGAVAGYLSLWSVFWLFKLCTGKDGMGYGDFKLLALLGAWGGWQILPLTLLLASLVG
AIAGVIVLRIRNAQTSVPLPFGPYLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 873 bp

>NTDB_id=593258 K1X80_RS24515 WP_120734166.1 5453473..5454345(+) (pilD) [Pseudomonas sp. So3.2b]
ATGACCCTGGACCTCCTCCTGACCCTCCATCCCTGGCTGTTCGTCTGGGCTTCATTGGTGCTGGGGCTGATCGTCGGCAG
CTTCCTCAACGTGCTGGTCTGGCGCCTGCCAAAAATGCTCGAGCGCGACTGGCGCGCCCAGGCCCATGAAATACTCGGCC
TGCCCCCGGAACCCGGCGGCCCGACCTATAACCTGTTGCACCCCAACTCCTGCTGCCCGCACTGCTCACAGCCGATTCGC
CCGTGGCAAAACATCCCGGTGCTCAGCTACTTGCTGCTGAGGGGGCGCTGCGCGCAGTGCCACGGTTCCATCAGCCCACG
CTACCCGCTGACCGAACTGGCGTGCGGGCTGCTTTCGGCATTTATTGCCTGGCATTACGGCTTCGGCTGGCCAGCCGCTG
GCGTGCTGTTCTTGAGCTGGGGCTTGCTAGCCATGAGCCTGATCGACGCCGATCACCAACTGCTGCCGGATGTGCTGGTG
CTGCCACTGCTGTGGCTGGGGTTGATCCTCAATTATTTCGAGTTGTACACGACCCTGCCCGATGCCCTGCTGGGCGCGGT
TGCCGGTTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGTTGTGCACCGGCAAGGACGGCATGGGCTATGGCGACT
TCAAGCTGCTGGCCCTGCTCGGTGCCTGGGGCGGTTGGCAGATCCTGCCGCTGACGCTGTTGCTGGCATCGCTGGTGGGG
GCGATCGCAGGGGTGATTGTCTTGCGCATACGCAACGCGCAGACGTCAGTGCCCTTGCCTTTTGGTCCCTATCTGGCGAT
TGCCGGCTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.035	98.276	0.531
pilD	Vibrio campbellii strain DS40M4	51.429	96.552	0.497
pilD	Acinetobacter baumannii D1279779	50.181	95.517	0.479
pilD	Acinetobacter nosocomialis M2	49.458	95.517	0.472
pilD	Neisseria gonorrhoeae MS11	52.174	87.241	0.455