Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   FBMFHHBO_RS03110 Genome accession   NZ_CP080452
Coordinates   656710..657120 (+) Length   136 a.a.
NCBI ID   WP_001200131.1    Uniprot ID   A0A0J1A5R4
Organism   Acinetobacter baumannii strain MRSN 56     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 651710..662120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBMFHHBO_RS03095 (FBMFHHBO_03095) - 652699..655005 (+) 2307 WP_000259109.1 RelA/SpoT family protein -
  FBMFHHBO_RS03100 (FBMFHHBO_03100) - 655050..655823 (-) 774 WP_000682841.1 SDR family oxidoreductase -
  FBMFHHBO_RS03105 (FBMFHHBO_03105) mazG 655935..656741 (+) 807 WP_000359493.1 nucleoside triphosphate pyrophosphohydrolase -
  FBMFHHBO_RS03110 (FBMFHHBO_03110) comEA 656710..657120 (+) 411 WP_001200131.1 ComEA family DNA-binding protein Machinery gene
  FBMFHHBO_RS03115 (FBMFHHBO_03115) pcnB 657245..658708 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  FBMFHHBO_RS03120 (FBMFHHBO_03120) folK 658705..659187 (+) 483 WP_000219215.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  FBMFHHBO_RS03125 (FBMFHHBO_03125) panB 659233..660042 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  FBMFHHBO_RS03130 (FBMFHHBO_03130) panC 660046..660894 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  FBMFHHBO_RS03135 (FBMFHHBO_03135) rapZ 660917..661768 (+) 852 WP_000821671.1 RNase adapter RapZ -
  FBMFHHBO_RS03140 (FBMFHHBO_03140) - 661765..662034 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15650.89 Da        Isoelectric Point: 10.3828

>NTDB_id=592928 FBMFHHBO_RS03110 WP_001200131.1 656710..657120(+) (comEA) [Acinetobacter baumannii strain MRSN 56]
MQYSIRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=592928 FBMFHHBO_RS03110 WP_001200131.1 656710..657120(+) (comEA) [Acinetobacter baumannii strain MRSN 56]
ATGCAATACAGCATAAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J1A5R4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

96.324

100

0.963
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

41.985

96.324

0.404