Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K0H59_RS02150 Genome accession   NZ_CP080411
Coordinates   464696..465967 (-) Length   423 a.a.
NCBI ID   WP_088211911.1    Uniprot ID   -
Organism   Shewanella sp. FJAT-51649     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 459696..470967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0H59_RS02115 (K0H59_02115) - 459817..460743 (+) 927 WP_089068632.1 exopolyphosphatase -
  K0H59_RS02120 (K0H59_02120) - 460818..461354 (-) 537 WP_220054510.1 thioredoxin family protein -
  K0H59_RS02125 (K0H59_02125) mutT 461502..461900 (-) 399 WP_220054511.1 8-oxo-dGTP diphosphatase MutT -
  K0H59_RS02130 (K0H59_02130) yacG 461935..462144 (-) 210 WP_011621218.1 DNA gyrase inhibitor YacG -
  K0H59_RS02135 (K0H59_02135) zapD 462268..463002 (-) 735 WP_220054512.1 cell division protein ZapD -
  K0H59_RS02140 (K0H59_02140) coaE 462995..463612 (-) 618 WP_220054513.1 dephospho-CoA kinase -
  K0H59_RS02145 (K0H59_02145) pilD 463705..464631 (-) 927 WP_220054514.1 A24 family peptidase Machinery gene
  K0H59_RS02150 (K0H59_02150) pilC 464696..465967 (-) 1272 WP_088211911.1 type II secretion system F family protein Machinery gene
  K0H59_RS02155 (K0H59_02155) pilB 466090..467799 (-) 1710 WP_088211910.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K0H59_RS02160 (K0H59_02160) - 467873..468298 (-) 426 WP_088211909.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  K0H59_RS02165 (K0H59_02165) nadC 469546..470427 (-) 882 WP_088211949.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46095.31 Da        Isoelectric Point: 10.2291

>NTDB_id=592589 K0H59_RS02150 WP_088211911.1 464696..465967(-) (pilC) [Shewanella sp. FJAT-51649]
MATATTVKKPRAKKSEQKSQPKIYTFEWKGINRDGQKTSGELRGASVAEIRSQLKSQGVNPKTVRKQSAALFKLGDAKIS
PMDIAMITRQIATMLAAGVPLVTTIELLGRGHEKAKMRELLGSILSEIQSGIPLSDSLRPHRRYFDDLYVDLVAAGEHSG
SLDVVFDRIATYREKSEALKSKIKKAMFYPAAVVVVAVLVTTLLLLFVVPQFEEIFKGFGAELPAFTQLVLHISRGLQSS
WYIFLGAIVAGVFLFVRAHRNSQMVRDRVDEAILKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAV
YRKAILKIRQEVMAGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVAHIYEMQVDDAVDGLSSLIEPIMMVVIG
TVVGGLIVAMYLPIFQMGKVVSG

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=592589 K0H59_RS02150 WP_088211911.1 464696..465967(-) (pilC) [Shewanella sp. FJAT-51649]
ATGGCTACGGCAACTACTGTAAAAAAGCCTCGTGCCAAAAAGAGCGAGCAAAAAAGCCAACCCAAAATATACACTTTCGA
ATGGAAGGGCATAAACCGTGATGGCCAAAAAACGAGCGGTGAGCTAAGGGGTGCTTCTGTCGCGGAAATCCGTAGCCAAC
TCAAATCCCAAGGTGTAAATCCTAAAACAGTCCGCAAGCAATCAGCAGCCCTATTTAAGCTAGGTGACGCAAAAATTAGT
CCAATGGATATTGCCATGATTACACGGCAAATTGCGACAATGCTTGCTGCGGGCGTCCCCTTAGTTACGACTATCGAGTT
ACTCGGTCGCGGTCATGAAAAAGCAAAAATGCGTGAGTTACTCGGCTCCATTCTTTCTGAAATCCAATCAGGTATCCCTC
TCTCAGATTCACTTCGCCCCCATAGGCGCTATTTCGATGATCTCTATGTTGACTTAGTGGCTGCGGGTGAGCACTCAGGC
TCTTTGGATGTAGTATTCGATCGTATAGCTACTTACCGTGAAAAGTCTGAAGCATTGAAATCTAAGATAAAAAAAGCCAT
GTTTTATCCAGCTGCAGTTGTTGTTGTTGCAGTTTTAGTCACGACGCTATTGTTACTCTTTGTTGTACCGCAGTTTGAAG
AGATTTTTAAAGGATTTGGCGCGGAATTACCCGCTTTTACTCAGTTGGTTCTTCATATATCCAGAGGCTTACAATCCTCT
TGGTATATTTTTTTGGGAGCTATCGTAGCTGGAGTATTTTTATTTGTTCGCGCCCATAGAAATTCACAAATGGTTCGAGA
TCGAGTGGATGAAGCGATATTAAAAATTCCTGCCATTGGACCTATTTTGCATAAAGGTGCTATGGCGCGTTTTGCTCGAA
CCTTGGCCACAACTTTTGCCGCAGGGGTTCCGTTAATCGATGGTTTAGAATCTGCGGCTGGAGCTTCAGGAAACGCTGTA
TACAGAAAAGCCATTTTGAAAATCCGTCAAGAGGTGATGGCAGGGATGCAAATGAATGTCGCCATGCGTACCACAGGGCT
TTTCCCCGATATGTTGATCCAAATGGTAATGATTGGTGAAGAGTCAGGTTCACTCGATAATATGTTAAACAAAGTGGCGC
ATATTTATGAGATGCAGGTCGATGATGCGGTTGATGGCTTATCAAGCCTTATCGAGCCCATTATGATGGTAGTTATTGGC
ACAGTTGTCGGCGGCCTCATTGTCGCTATGTATTTACCAATCTTCCAAATGGGTAAAGTTGTAAGTGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.556

93.617

0.52
  pilC Legionella pneumophila strain ERS1305867

50.248

95.508

0.48
  pilC Acinetobacter baylyi ADP1

49.874

93.853

0.468
  pilC Acinetobacter baumannii D1279779

49.497

94.09

0.466
  pilC Vibrio cholerae strain A1552

47.739

94.09

0.449
  pilC Vibrio campbellii strain DS40M4

45.297

95.508

0.433
  pilG Neisseria meningitidis 44/76-A

41.191

95.272

0.392
  pilG Neisseria gonorrhoeae MS11

41.191

95.272

0.392