Detailed information NTG0592588

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: K0H59_RS02145
• Genome accession: NZ_CP080411
• Coordinates: 463705..464631 (-)
• Length: 308 a.a.
• NCBI ID: WP_220054514.1
• Uniprot ID: -
• Organism: Shewanella sp. FJAT-51649
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 458705..469631

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K0H59_RS02115 (K0H59_02115)	-	459817..460743 (+)	927	WP_089068632.1	exopolyphosphatase	-
K0H59_RS02120 (K0H59_02120)	-	460818..461354 (-)	537	WP_220054510.1	thioredoxin family protein	-
K0H59_RS02125 (K0H59_02125)	mutT	461502..461900 (-)	399	WP_220054511.1	8-oxo-dGTP diphosphatase MutT	-
K0H59_RS02130 (K0H59_02130)	yacG	461935..462144 (-)	210	WP_011621218.1	DNA gyrase inhibitor YacG	-
K0H59_RS02135 (K0H59_02135)	zapD	462268..463002 (-)	735	WP_220054512.1	cell division protein ZapD	-
K0H59_RS02140 (K0H59_02140)	coaE	462995..463612 (-)	618	WP_220054513.1	dephospho-CoA kinase	-
K0H59_RS02145 (K0H59_02145)	pilD	463705..464631 (-)	927	WP_220054514.1	A24 family peptidase	Machinery gene
K0H59_RS02150 (K0H59_02150)	pilC	464696..465967 (-)	1272	WP_088211911.1	type II secretion system F family protein	Machinery gene
K0H59_RS02155 (K0H59_02155)	pilB	466090..467799 (-)	1710	WP_088211910.1	type IV-A pilus assembly ATPase PilB	Machinery gene
K0H59_RS02160 (K0H59_02160)	-	467873..468298 (-)	426	WP_088211909.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34309.74 Da
• Isoelectric Point: 7.7058

>NTDB_id=592588 K0H59_RS02145 WP_220054514.1 463705..464631(-) (pilD) [Shewanella sp. FJAT-51649]
MTDFISLLGHSLAQSPWLFITLSFVFAATIGSFLNVVIHRFPVMMKREWQQECNQYLQEYHADVVKQIGIEKLNKPIDTY
PDKYNLVVPGSACPKCKTAIKPWHNLPIVGWLMLRGKCAACNTSISSRYPIVELVTGLLVTTLAWHFGPSWQFVFAAVLT
FVLIALTGIDLDEMLLPDQMTLPLLWLGLLINLNHTFTTPTDAVIGAAAGYLSLWSVFWLFKLLTGKEGMGYGDFKLLAV
FGAWLGWQMLPLVILLSSLVGALVGITLIVLKRNQLANPIPFGPYIAAAGWIALIWGQPIVDWYLSTL

Nucleotide

• Length: 927 bp

>NTDB_id=592588 K0H59_RS02145 WP_220054514.1 463705..464631(-) (pilD) [Shewanella sp. FJAT-51649]
ATGACTGACTTTATATCCCTTTTAGGCCACTCTCTTGCTCAGAGTCCTTGGCTGTTTATTACGTTAAGTTTTGTGTTTGC
CGCCACTATTGGCAGCTTCTTAAATGTCGTCATTCACCGCTTTCCGGTAATGATGAAGCGCGAATGGCAACAGGAGTGCA
ATCAATATCTACAGGAATATCATGCTGATGTTGTAAAGCAGATTGGCATAGAAAAGCTCAATAAGCCGATAGATACTTAC
CCTGATAAATACAATCTAGTGGTACCAGGTTCCGCCTGTCCTAAATGTAAGACCGCAATCAAGCCTTGGCATAATTTGCC
GATTGTGGGCTGGTTAATGCTCAGGGGAAAATGCGCCGCCTGCAATACATCGATCTCCTCACGCTATCCGATTGTTGAGT
TAGTAACAGGATTATTAGTTACAACACTCGCTTGGCATTTTGGTCCTAGCTGGCAATTTGTGTTTGCTGCTGTATTAACC
TTTGTATTGATTGCATTAACGGGTATCGATCTGGATGAGATGCTACTGCCAGATCAGATGACCCTTCCACTCCTATGGCT
AGGATTACTCATTAACCTCAACCATACCTTTACTACTCCAACCGATGCCGTTATAGGTGCTGCAGCGGGCTATTTGAGTC
TCTGGTCGGTATTTTGGCTGTTTAAGCTACTCACAGGTAAAGAAGGTATGGGTTATGGCGACTTTAAACTGCTCGCCGTA
TTTGGTGCATGGCTAGGTTGGCAAATGCTCCCCCTAGTCATATTACTGTCCTCTTTAGTCGGCGCCCTTGTCGGCATCAC
GCTCATCGTACTCAAACGTAATCAGCTAGCGAACCCGATCCCCTTTGGGCCTTATATTGCCGCCGCTGGTTGGATAGCCC
TGATCTGGGGGCAACCTATAGTCGATTGGTATCTAAGTACGCTATAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (158-266)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-147)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.186	95.779	0.49
pilD	Vibrio campbellii strain DS40M4	50	95.455	0.477
pilD	Acinetobacter nosocomialis M2	48.039	99.351	0.477
pilD	Acinetobacter baumannii D1279779	47.712	99.351	0.474
pilD	Neisseria gonorrhoeae MS11	46.048	94.481	0.435