Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KY496_RS23830 Genome accession   NZ_CP080379
Coordinates   5383159..5384391 (-) Length   410 a.a.
NCBI ID   WP_219862731.1    Uniprot ID   -
Organism   Massilia sp. NP310     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5378159..5389391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KY496_RS23810 (KY496_23810) - 5379172..5380521 (+) 1350 WP_219862723.1 SGNH/GDSL hydrolase family protein -
  KY496_RS23815 (KY496_23815) - 5380561..5381769 (+) 1209 WP_219862725.1 serine protease -
  KY496_RS23820 (KY496_23820) - 5381999..5382400 (-) 402 WP_219862727.1 hypothetical protein -
  KY496_RS23825 (KY496_23825) - 5382442..5382789 (-) 348 WP_219862729.1 helix-turn-helix transcriptional regulator -
  KY496_RS23830 (KY496_23830) pilC 5383159..5384391 (-) 1233 WP_219862731.1 type II secretion system F family protein Machinery gene
  KY496_RS23835 (KY496_23835) pilF 5384414..5386141 (-) 1728 WP_219862732.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KY496_RS23840 (KY496_23840) - 5386344..5387912 (-) 1569 WP_219862734.1 methyl-accepting chemotaxis protein -
  KY496_RS23845 (KY496_23845) - 5388007..5388411 (-) 405 WP_219862736.1 hypothetical protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44897.94 Da        Isoelectric Point: 10.1336

>NTDB_id=592440 KY496_RS23830 WP_219862731.1 5383159..5384391(-) (pilC) [Massilia sp. NP310]
MATSPQPKSRGAQVKENVYAWEGKDKTGRVVRGEVRAGGEAIVNVTLRRQGIMVTKVKKKVYRSGRKITDKDLTMFTRQL
ATMMKAGVPLLQSFDIVGKGHSNPSMAKLIQDLRNDVETGTSLNRAFRKFPLYFDPLFCNLVGAGEQAGILEDLLTRLAI
YKEKTLALKGKIKSALTYPIAILAVALVVTAVIMIWVVPAFKQVFSSFGADLPTPTVVVMAISDFVVEWWYVIFGSLFAG
LYLFFQAWRRSLRMQQVMDRLLLRLPIFGSVIRKATIARWTRTLSTMFAAGVPLVEALDSVGGASGNAVYLEATRKIQNE
VSTGTSLTASMQNADVFPNLVIQMVQIGEESGALDAMLGKVADFFEDEVDEAVAALSSLMEPLIMVILGVLIGGLVIAMY
LPIFKLGSVV

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=592440 KY496_RS23830 WP_219862731.1 5383159..5384391(-) (pilC) [Massilia sp. NP310]
ATGGCAACATCCCCCCAACCCAAGAGCCGTGGCGCGCAGGTCAAGGAAAACGTGTACGCCTGGGAGGGCAAGGACAAGAC
CGGCCGCGTGGTGCGCGGCGAAGTGCGCGCCGGTGGCGAGGCGATCGTCAACGTGACCCTGCGCCGCCAGGGCATCATGG
TCACCAAGGTCAAGAAGAAGGTCTACCGCAGCGGCCGCAAGATCACGGACAAGGACCTGACCATGTTCACGCGCCAGCTC
GCGACCATGATGAAGGCCGGCGTGCCGCTGCTGCAATCGTTCGACATCGTCGGCAAGGGCCACAGCAACCCGTCGATGGC
CAAGCTGATCCAGGACCTGCGCAACGACGTCGAGACCGGCACCAGCCTGAACCGCGCCTTCCGCAAGTTCCCGCTGTACT
TCGATCCGCTGTTCTGCAACCTGGTCGGCGCCGGCGAACAGGCCGGCATCCTGGAAGACCTGCTCACGCGCCTGGCGATC
TACAAGGAAAAGACGCTGGCACTCAAGGGCAAGATCAAGTCGGCCCTGACCTATCCGATCGCGATCCTGGCGGTGGCCCT
GGTCGTCACCGCCGTGATCATGATCTGGGTGGTGCCGGCCTTCAAGCAGGTGTTCTCGAGCTTCGGCGCCGACTTGCCGA
CCCCGACCGTGGTGGTGATGGCGATCTCCGACTTCGTCGTGGAATGGTGGTACGTGATCTTCGGCTCGCTGTTCGCCGGG
CTGTACCTGTTTTTCCAGGCCTGGCGCCGCTCGCTCAGGATGCAGCAGGTGATGGACCGCCTGCTGCTGCGCCTGCCGAT
CTTCGGCAGCGTGATCCGCAAGGCCACCATCGCGCGCTGGACCCGTACCCTGTCGACCATGTTCGCGGCCGGCGTGCCGC
TGGTGGAAGCGCTCGACTCGGTCGGCGGGGCGTCGGGCAATGCGGTCTACCTGGAAGCCACGCGCAAGATCCAGAACGAG
GTCAGCACCGGCACCAGCCTGACCGCCTCGATGCAGAATGCGGACGTGTTCCCGAACCTCGTGATCCAGATGGTGCAGAT
CGGCGAAGAGTCGGGGGCGCTCGATGCGATGCTGGGCAAGGTGGCGGATTTCTTCGAGGATGAGGTCGATGAGGCGGTGG
CGGCGTTGTCGTCGCTGATGGAGCCGCTGATCATGGTGATTCTTGGGGTGTTGATCGGCGGGCTGGTGATTGCGATGTAT
TTGCCGATCTTCAAGCTGGGGTCGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)

Type II secretion system (T2SS), protein F (T2SSF)

(280-402)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54

97.561

0.527
  pilC Legionella pneumophila strain ERS1305867

54.293

96.585

0.524
  pilC Acinetobacter baylyi ADP1

51.508

97.073

0.5
  pilG Neisseria gonorrhoeae MS11

51.637

96.829

0.5
  pilC Acinetobacter baumannii D1279779

51.385

96.829

0.498
  pilG Neisseria meningitidis 44/76-A

51.134

96.829

0.495
  pilC Vibrio campbellii strain DS40M4

40.196

99.512

0.4
  pilC Vibrio cholerae strain A1552

39.75

97.561

0.388
  pilC Thermus thermophilus HB27

38.095

97.317

0.371