Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   K0P33_RS03240 Genome accession   NZ_CP080330
Coordinates   730699..732027 (+) Length   442 a.a.
NCBI ID   WP_094949291.1    Uniprot ID   -
Organism   Pseudomonas sp. ArH3a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 725699..737027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0P33_RS03220 (K0P33_03210) - 725775..728240 (-) 2466 WP_242153995.1 penicillin-binding protein 1A -
  K0P33_RS03225 (K0P33_03215) pilM 728457..729113 (+) 657 WP_242153997.1 type IV pilus assembly protein PilM -
  K0P33_RS03230 (K0P33_03220) - 729110..729661 (+) 552 WP_094949293.1 PilN domain-containing protein -
  K0P33_RS03235 (K0P33_03225) - 729658..730629 (+) 972 WP_242153999.1 pilus assembly protein PilP -
  K0P33_RS03240 (K0P33_03230) pilQ 730699..732027 (+) 1329 WP_094949291.1 type IV pilus secretin PilQ family protein Machinery gene
  K0P33_RS03245 (K0P33_03235) aroK 732032..732550 (+) 519 WP_071482666.1 shikimate kinase AroK -
  K0P33_RS03250 (K0P33_03240) aroB 732675..733775 (+) 1101 WP_094949290.1 3-dehydroquinate synthase -
  K0P33_RS03255 (K0P33_03245) - 733786..735348 (+) 1563 WP_094949289.1 AAA family ATPase -

Sequence

Protein


Download         Length: 442 a.a.        Molecular weight: 47990.06 Da        Isoelectric Point: 4.8677

>NTDB_id=592182 K0P33_RS03240 WP_094949291.1 730699..732027(+) (pilQ) [Pseudomonas sp. ArH3a]
MASAVPNRVDLIQLPPPGQAALGTPYAGDKLNLNFQNIDVRVVLQQIADVAGLNLVASDEVQGSITLRLKEVPWDQALDL
VLQSKGLDKRVKAGVLLVAPAEELAARELLTLEASKQMADLAPLRRELLQVNYAKAADLAKLFQSVTGLEGITDERGSVA
VDDRTNNIIAYQTSERLEELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGRLNRGNWGAGGISKPLGEGVEPP
VNPPSSPFVDMGSLTGTAGLGIAYITDNLLLDLELTAMEKTGNGEIVSQPKVVTSDKETARILKGTEIPYQESSGRGATS
VSFKEASLSLEVTPQITPDGWVFMEVKVTKDEPDYLNKLNDVPPIKKNEVNAKVLVKDGETIVIGGVFSNTQSKVVDKVP
FLGDVPYLGRLFRRDVVAQRKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 1329 bp        

>NTDB_id=592182 K0P33_RS03240 WP_094949291.1 730699..732027(+) (pilQ) [Pseudomonas sp. ArH3a]
ATGGCATCTGCTGTGCCCAATCGTGTGGATCTGATCCAGCTGCCGCCTCCCGGTCAGGCAGCTCTGGGCACTCCCTATGC
CGGCGACAAGCTGAACCTTAACTTCCAGAACATCGATGTGCGTGTCGTATTGCAGCAGATTGCGGATGTCGCGGGGCTTA
ACTTGGTGGCCAGCGATGAGGTGCAGGGCTCGATCACCCTGCGGCTCAAAGAGGTGCCCTGGGATCAGGCGCTGGACCTG
GTGCTGCAAAGCAAAGGCTTGGACAAGCGCGTGAAAGCCGGTGTGTTGCTGGTGGCGCCGGCCGAAGAGCTGGCGGCTCG
CGAACTGCTGACACTGGAGGCAAGTAAACAGATGGCGGATTTGGCGCCGTTGCGCCGGGAGCTGTTGCAGGTCAATTACG
CCAAGGCGGCGGACCTGGCCAAGTTGTTCCAGTCGGTGACGGGCCTGGAAGGCATCACCGATGAGCGCGGCTCAGTGGCG
GTGGATGACCGCACCAATAACATCATCGCCTACCAGACCAGCGAGCGGCTCGAAGAGCTGCGGCGGATCGTGGCGCAGTT
GGACATTCCAGTGCGCCAGGTGATGATTGAAGCGCGGATCGTCGAGGCCAATGTCGATTACGACAAAAGCCTGGGCGTGC
GCTGGGGCGGCCGACTCAACCGTGGCAACTGGGGCGCGGGTGGTATCAGCAAGCCCTTGGGCGAAGGGGTTGAGCCGCCG
GTAAACCCGCCCAGCTCACCGTTTGTCGACATGGGTTCGCTCACCGGTACGGCAGGCCTGGGCATCGCCTATATCACCGA
CAACCTGTTGCTGGACTTGGAGCTGACCGCCATGGAGAAAACCGGCAACGGTGAAATCGTCTCACAGCCCAAGGTGGTCA
CCTCCGACAAGGAAACCGCGCGCATCCTCAAGGGCACCGAAATCCCCTACCAGGAATCCAGCGGCCGGGGTGCAACGTCA
GTGTCCTTCAAGGAGGCTTCGCTGTCGCTGGAGGTCACCCCGCAAATTACCCCTGACGGCTGGGTGTTCATGGAGGTCAA
GGTCACCAAGGATGAGCCCGATTACCTGAATAAGCTCAATGACGTGCCGCCGATCAAGAAAAACGAAGTTAATGCCAAGG
TATTGGTCAAGGATGGCGAGACCATCGTCATCGGCGGGGTTTTCTCCAATACCCAAAGCAAAGTGGTAGATAAAGTGCCA
TTTTTGGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGCGATGTGGTTGCGCAAAGAAAATCCGAGCTGCTGGTATT
CCTGACTCCGCGTATTATGAATAACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(277-433)

Bacterial type II/III secretion system short domain (Secretin_N)

(128-193)

Secretin and TonB N terminus short domain (STN)

(54-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

71.33

98.643

0.704
  pilQ Acinetobacter baumannii D1279779

41.328

100

0.437
  pilQ Acinetobacter baumannii strain A118

41.328

100

0.437
  comQ Acinetobacter baylyi ADP1

42.094

100

0.428
  pilQ Vibrio campbellii strain DS40M4

42.89

97.059

0.416
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

43.541

94.57

0.412
  pilQ Vibrio cholerae strain A1552

43.541

94.57

0.412
  pilQ Legionella pneumophila strain Lp02

42.143

95.023

0.4
  pilQ Legionella pneumophila strain ERS1305867

42.143

95.023

0.4