Detailed information NTG0591265

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: M2J77_RS06925
• Genome accession: NZ_CP096909
• Coordinates: 1482369..1483586 (-)
• Length: 405 a.a.
• NCBI ID: WP_003107299.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain NY8688
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1477369..1488586

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M2J77_RS06880 (M2J77_06875)	-	1477553..1478002 (-)	450	WP_003094670.1	MOSC domain-containing protein	-
M2J77_RS06885 (M2J77_06880)	-	1477999..1478628 (-)	630	WP_003094668.1	DUF1780 domain-containing protein	-
M2J77_RS06890 (M2J77_06885)	-	1478761..1479186 (+)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
M2J77_RS06895 (M2J77_06890)	-	1479183..1479653 (+)	471	WP_270144846.1	FAD/FMN-containing dehydrogenase	-
M2J77_RS06900 (M2J77_06895)	-	1479650..1480339 (+)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
M2J77_RS06905 (M2J77_06900)	-	1480445..1480654 (+)	210	WP_003094660.1	hypothetical protein	-
M2J77_RS06910 (M2J77_06905)	yacG	1480691..1480891 (-)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
M2J77_RS06915 (M2J77_06910)	coaE	1480888..1481499 (-)	612	WP_003094654.1	dephospho-CoA kinase	-
M2J77_RS06920 (M2J77_06915)	pilD	1481496..1482368 (-)	873	WP_003107301.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
M2J77_RS06925 (M2J77_06920)	pilC	1482369..1483586 (-)	1218	WP_003107299.1	type II secretion system F family protein	Machinery gene
M2J77_RS06930 (M2J77_06925)	pilB	1483590..1485290 (-)	1701	WP_003122078.1	type IV-A pilus assembly ATPase PilB	Machinery gene
M2J77_RS06935 (M2J77_06930)	pilA	1485521..1485985 (+)	465	WP_003122079.1	pilin	Machinery gene
M2J77_RS06940 (M2J77_06935)	-	1486061..1487446 (+)	1386	WP_003122080.1	O-antigen ligase family protein	-
M2J77_RS06950 (M2J77_06945)	nadC	1487627..1488475 (-)	849	WP_003122081.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 405 a.a.
• Molecular weight: 44001.86 Da
• Isoelectric Point: 9.8103

>NTDB_id=591265 M2J77_RS06925 WP_003107299.1 1482369..1483586(-) (pilC) [Pseudomonas aeruginosa strain NY8688]
MADKALKTSVFVWEGTDKKGTKVKGELSSQNPTLVKAQLRKQGITPVKVRKKGISLLGAGKKIKPMDIALFTRQMSTMMA
AGVPLLQSFDIISEGFDNPNMRKLVEEIKQEVAGGNSLANSLRKKPQYFDSLYCNLVDAGEQSGALETLLDRVATYKEKT
EALKAKIKKAMTYPIAVIVVAIIVSAILLIKVVPQFQSVFEGFGAELPAFTMMVINISNVLQEWWLLVLLMMGGAGFLLN
HAYKRSEKFRDATDRTVLKLPIVGAILYKSAVARYARTLSTTFAAGVPLVEALDSVSGATGNVVFRDAVGKIKQDVSTGM
QLNFSMRTTNIFPSMAIQMTAIGEESGALDDMLAKVAGFYEQEVDNAVDNLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGNVV

Nucleotide

• Length: 1218 bp

>NTDB_id=591265 M2J77_RS06925 WP_003107299.1 1482369..1483586(-) (pilC) [Pseudomonas aeruginosa strain NY8688]
ATGGCGGACAAAGCGTTAAAGACCAGTGTCTTCGTATGGGAAGGCACTGACAAGAAAGGCACCAAGGTCAAGGGCGAGCT
GTCCAGCCAGAACCCGACCCTGGTCAAGGCGCAACTGCGCAAGCAGGGCATCACGCCGGTCAAGGTCCGCAAGAAAGGCA
TCTCCCTGCTGGGGGCGGGGAAGAAGATCAAGCCTATGGACATCGCCCTGTTCACCCGCCAGATGTCCACCATGATGGCC
GCCGGCGTGCCGCTGCTGCAGTCGTTCGACATCATCAGCGAAGGCTTCGACAATCCGAACATGCGCAAGCTGGTGGAGGA
GATCAAGCAGGAAGTCGCCGGCGGCAACAGCCTGGCCAACTCGCTGCGCAAGAAGCCGCAGTACTTCGACTCGCTCTACT
GCAACCTGGTGGACGCCGGCGAACAATCCGGCGCCCTGGAAACCCTGCTCGACCGGGTCGCCACCTACAAGGAAAAGACC
GAGGCGCTGAAGGCCAAGATCAAGAAGGCCATGACCTACCCGATCGCGGTGATCGTCGTCGCCATCATCGTTTCGGCGAT
CCTACTGATCAAGGTGGTGCCGCAGTTCCAGTCGGTGTTCGAGGGCTTCGGCGCCGAACTGCCAGCCTTCACCATGATGG
TCATCAACATTTCCAACGTACTCCAGGAATGGTGGCTCCTGGTACTGCTGATGATGGGCGGCGCCGGCTTCCTGCTGAAC
CACGCCTACAAGCGTTCGGAGAAGTTCCGCGACGCCACCGACCGCACGGTACTGAAGCTGCCTATCGTCGGCGCCATCCT
CTACAAATCCGCCGTGGCACGCTACGCGCGGACGCTGTCGACCACCTTCGCCGCCGGCGTGCCATTGGTGGAAGCCCTCG
ACTCGGTTTCCGGAGCCACCGGCAACGTGGTGTTCAGGGACGCGGTGGGCAAGATCAAGCAGGACGTGTCCACCGGCATG
CAGCTGAACTTCTCCATGCGCACCACCAACATCTTCCCCAGCATGGCCATCCAGATGACCGCCATCGGCGAGGAGTCGGG
CGCGCTGGACGACATGCTGGCCAAGGTCGCTGGCTTCTACGAGCAGGAAGTGGATAATGCCGTGGACAACCTGACCGCCC
TGATGGAGCCGATGATCATGGCGGTCCTCGGGGTCCTGGTCGGTGGCCTGATCATCGCCATGTACCTGCCGATCTTCCAG
CTGGGCAACGTCGTCTAA

Domains

Predicted by InterProScan.

• Type II secretion system (T2SS), protein F (T2SSF) (276-397)

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	78.765	100	0.788
pilC	Acinetobacter baylyi ADP1	61.029	100	0.615
pilC	Acinetobacter baumannii D1279779	60.396	99.753	0.602
pilC	Legionella pneumophila strain ERS1305867	54.293	97.778	0.531
pilG	Neisseria gonorrhoeae MS11	46.04	99.753	0.459
pilG	Neisseria meningitidis 44/76-A	45.522	99.259	0.452
pilC	Vibrio cholerae strain A1552	41.481	100	0.415
pilC	Vibrio campbellii strain DS40M4	40.648	99.012	0.402
pilC	Thermus thermophilus HB27	38.155	99.012	0.378