Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   LPB404_RS02760 Genome accession   NZ_CP079821
Coordinates   543457..545442 (+) Length   661 a.a.
NCBI ID   WP_219074983.1    Uniprot ID   -
Organism   Streptococcus rubneri strain LPB0404     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 538457..550442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB404_RS02745 (LPB404_02745) - 539092..539664 (+) 573 WP_219074981.1 hypothetical protein -
  LPB404_RS02750 (LPB404_02750) pbp3 539884..541125 (-) 1242 WP_374030706.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  LPB404_RS02755 (LPB404_02755) amiA3 541301..543265 (+) 1965 WP_219074982.1 peptide ABC transporter substrate-binding protein Regulator
  LPB404_RS02760 (LPB404_02760) amiA3 543457..545442 (+) 1986 WP_219074983.1 peptide ABC transporter substrate-binding protein Regulator
  LPB404_RS02765 (LPB404_02765) amiC 545507..547006 (+) 1500 WP_023022220.1 ABC transporter permease Regulator
  LPB404_RS02770 (LPB404_02770) amiD 547006..547932 (+) 927 WP_023022222.1 oligopeptide ABC transporter permease OppC Regulator
  LPB404_RS02775 (LPB404_02775) amiE 547944..549011 (+) 1068 WP_219074984.1 ABC transporter ATP-binding protein Regulator
  LPB404_RS02780 (LPB404_02780) amiF 549021..549944 (+) 924 WP_219074985.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 73150.17 Da        Isoelectric Point: 4.8363

>NTDB_id=589742 LPB404_RS02760 WP_219074983.1 543457..545442(+) (amiA3) [Streptococcus rubneri strain LPB0404]
MKKSKVFAFAGVTLLAATFLAACSGSKDSKSASKKDTTYGYVYTDDPTTLDYTVSSKASVHDITTNGVDGLLENDKYGNL
VPSIAEDWSVSKDGLTYTYKIRKGVKWYDADGEEHGEVTAHDFVTGLKHAADKKSESLPLVKDSIKGLKDYSEGKISDFS
EVGVKAIDDYTLEYTLNQPETFWNSKTTNGVLFPISTEFLKSKGDEFGQPGNVKSILFNGPFLLKSITSKSEITFEKNED
YWDKDNVHIDKIKLSYYDGSDQDSIARGFSDGSYTKARLYPASSNFASVEEKYKDNIYNTQPGSGVAVLGFNIDRQAYNH
TSKTSDEQKSSTKKAILNKDFRQAITFALNRENYSAQVNGKEYAKAAIRNMYTAPAFVQVNGKDFGDVVADKLQTYGDQW
SGVNLADSQNGLYSKEKAKAQFEKAKAELQKEGVQFPIHLDVPVAQNSTNFVSRMQSFKQSVEETLGTENVVVDLQMMDQ
DEVLNITLNVPSAAETDWDLQGLVGWNPDYDDPSTYLDTLQPSSPDQTKTYLGFAGGVDNASAKAVGLDEYAKLLDDAEK
ETLDVVTRYEKFAAAQAWLTDSALVIPTMTSSGAATVVSKVVPFSEPSSQTGNKGSTYFKYVEIQDEPVTKKQYDQAREK
WLKEKAESNKKAQQDLEKHVK

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=589742 LPB404_RS02760 WP_219074983.1 543457..545442(+) (amiA3) [Streptococcus rubneri strain LPB0404]
ATGAAAAAAAGTAAAGTTTTTGCATTTGCCGGAGTAACATTGCTCGCAGCAACTTTCCTTGCAGCATGTTCTGGCTCAAA
AGATAGCAAGTCTGCATCAAAAAAAGATACAACGTATGGCTATGTTTATACAGATGATCCTACAACTTTGGATTACACCG
TATCTTCAAAAGCTTCCGTACACGATATTACAACAAACGGTGTAGATGGTTTGTTGGAAAATGACAAATACGGAAACCTT
GTGCCATCTATTGCTGAAGATTGGTCTGTTTCAAAAGACGGTTTGACTTATACTTACAAAATCCGTAAGGGTGTTAAATG
GTATGATGCCGACGGCGAAGAGCATGGTGAAGTAACAGCCCATGACTTTGTTACTGGATTGAAGCATGCGGCAGACAAGA
AATCAGAATCTCTTCCATTGGTGAAAGACTCAATCAAAGGATTGAAAGACTACTCAGAAGGAAAAATTTCAGACTTCTCT
GAGGTTGGGGTCAAAGCAATAGATGATTATACACTTGAGTATACTTTGAATCAACCAGAAACTTTTTGGAATTCAAAAAC
AACTAATGGAGTTCTTTTCCCAATTAGTACAGAATTCTTGAAGAGCAAGGGTGATGAATTTGGTCAACCAGGTAATGTCA
AATCAATCTTGTTCAATGGTCCATTCCTTTTGAAATCAATCACTTCTAAATCAGAAATCACTTTTGAAAAGAACGAAGAT
TACTGGGATAAAGACAACGTTCATATTGACAAGATTAAATTGTCTTATTATGATGGATCAGATCAAGATTCCATAGCGCG
CGGTTTTAGCGATGGTTCATATACCAAGGCGCGTCTATACCCTGCTAGCTCTAACTTTGCGTCTGTTGAAGAAAAATACA
AAGACAATATCTACAACACACAGCCTGGTTCTGGTGTCGCAGTCTTAGGTTTCAACATTGACCGTCAAGCCTACAACCAT
ACTTCTAAAACATCAGATGAGCAGAAATCTTCTACGAAGAAAGCTATCTTGAACAAGGATTTCCGTCAAGCCATCACCTT
TGCCTTGAACCGCGAAAATTATTCAGCACAAGTTAATGGTAAAGAATACGCTAAGGCTGCTATTCGAAATATGTACACTG
CACCTGCCTTTGTTCAAGTAAACGGTAAAGACTTTGGTGATGTAGTAGCAGACAAGTTGCAAACTTATGGGGATCAATGG
AGCGGTGTGAATCTTGCAGACAGTCAAAACGGACTCTATAGCAAGGAAAAAGCAAAAGCTCAGTTTGAAAAGGCAAAAGC
TGAACTCCAAAAAGAGGGTGTTCAATTCCCAATCCACTTGGATGTTCCGGTTGCACAAAACTCAACAAACTTTGTGTCAC
GGATGCAATCCTTCAAACAATCAGTTGAAGAAACACTTGGTACAGAAAACGTTGTTGTGGACCTTCAAATGATGGACCAA
GATGAAGTCTTGAACATTACTCTTAACGTACCATCAGCTGCAGAAACTGACTGGGACCTTCAAGGACTTGTAGGATGGAA
TCCAGACTATGATGACCCATCTACTTACCTTGATACCTTGCAACCATCTTCTCCAGACCAAACTAAGACTTATCTTGGAT
TTGCTGGTGGTGTCGATAATGCCTCTGCTAAGGCTGTTGGCTTAGATGAATATGCGAAGTTGCTTGATGATGCAGAAAAA
GAAACCCTAGACGTAGTGACACGTTATGAAAAATTTGCAGCAGCGCAAGCTTGGTTAACAGATAGCGCATTGGTAATTCC
AACTATGACAAGCTCTGGTGCAGCTACAGTGGTTTCAAAAGTGGTTCCATTCTCTGAACCTTCATCACAAACAGGTAACA
AAGGATCAACTTATTTCAAATATGTTGAAATTCAAGATGAACCTGTCACTAAAAAACAATATGATCAAGCACGTGAAAAA
TGGTTGAAAGAAAAAGCTGAATCAAACAAGAAGGCTCAGCAAGATCTTGAAAAACACGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(80-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.427

100

0.596
  amiA3 Streptococcus thermophilus LMG 18311

58.974

100

0.592
  amiA Streptococcus salivarius strain HSISS4

58.61

100

0.587