Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   LPB404_RS02755 Genome accession   NZ_CP079821
Coordinates   541301..543265 (+) Length   654 a.a.
NCBI ID   WP_219074982.1    Uniprot ID   -
Organism   Streptococcus rubneri strain LPB0404     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 536301..548265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB404_RS02735 (LPB404_02735) sufU 537081..537515 (+) 435 WP_219074980.1 Fe-S cluster assembly sulfur transfer protein SufU -
  LPB404_RS02740 (LPB404_02740) sufB 537660..539072 (+) 1413 WP_023022212.1 Fe-S cluster assembly protein SufB -
  LPB404_RS02745 (LPB404_02745) - 539092..539664 (+) 573 WP_219074981.1 hypothetical protein -
  LPB404_RS02750 (LPB404_02750) pbp3 539884..541125 (-) 1242 WP_374030706.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  LPB404_RS02755 (LPB404_02755) amiA3 541301..543265 (+) 1965 WP_219074982.1 peptide ABC transporter substrate-binding protein Regulator
  LPB404_RS02760 (LPB404_02760) amiA3 543457..545442 (+) 1986 WP_219074983.1 peptide ABC transporter substrate-binding protein Regulator
  LPB404_RS02765 (LPB404_02765) amiC 545507..547006 (+) 1500 WP_023022220.1 ABC transporter permease Regulator
  LPB404_RS02770 (LPB404_02770) amiD 547006..547932 (+) 927 WP_023022222.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 72699.75 Da        Isoelectric Point: 4.8074

>NTDB_id=589741 LPB404_RS02755 WP_219074982.1 541301..543265(+) (amiA3) [Streptococcus rubneri strain LPB0404]
MKVNKRFVLAGVSLASALLLTACGGGSSNQSTYSYIYSTDPNTLDYIASTRTTTSDITSNLVDGLLENDKYGNLIPSLAE
DWTVSEDGLVYTYKLRKDAKWYTSEGEEYGAVTAQDFVTGIKHAVEAKSEGLFLIQNSIKGLDAFVKGETKDFNTVGVKA
LDDYTIQYTLERPESFWNSKTTSGVLFPVNKAFLESQGKDFGSLKPSSILYNGPYYLKNLTSKSQIELVKNKEYYDEKNV
HIDHVKLTYNDGSDPESVIKKFENGQYSFATVMPNSSTYKSVKKKFGDNIVYGVQYGTSYYLGFNIDRQKYNHTAKTTDA
QKSSTKQAILNKDFRQAVNFAFDREAYAAQTSGADAATKILRNTLVPPTFVQVNGEEFGKVVEKQLVTYGDEWKDVNLDD
AQTTLYNQEKAKAEFAKAKEQLQKEGVEFPIHLDYVVSQTDNSQVQQASSFKQSVEAVLGADNVVVDIQKLSDDDFNNIT
YFTDTAAEKDYDLAGGGWVPDYQDPSTYLESLSPVNGSVFYYLGVDAGSNSPAIPAVDFGKYAELLKDANAEVNDQAVRY
EKYAAAQAWLTDSSLILPTVSNGGTPMLQRTVPYSRAASWVGTKGTGTNYKYLELSEEVIKTKDYDASKEKWLKEKAESN
KKAQEELKNHIESK

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=589741 LPB404_RS02755 WP_219074982.1 541301..543265(+) (amiA3) [Streptococcus rubneri strain LPB0404]
ATGAAAGTAAATAAACGGTTCGTACTGGCCGGTGTTTCTCTAGCCAGTGCTCTTCTATTGACAGCCTGTGGCGGTGGAAG
CAGCAATCAATCTACTTATTCTTATATTTATTCAACAGATCCAAATACTTTGGACTACATTGCCTCGACTCGTACAACAA
CGTCTGATATTACAAGTAACCTTGTTGATGGTTTGTTAGAAAATGATAAATATGGAAATTTAATCCCAAGTTTGGCAGAA
GACTGGACTGTTTCGGAAGATGGCTTGGTGTATACCTATAAACTTCGAAAAGATGCAAAATGGTATACCAGTGAGGGAGA
AGAGTATGGTGCTGTAACAGCCCAGGACTTTGTAACAGGTATCAAACACGCTGTGGAAGCAAAATCTGAGGGTCTTTTCT
TAATCCAAAATTCGATTAAAGGCTTAGATGCATTTGTCAAAGGTGAAACAAAAGATTTCAATACAGTTGGCGTGAAAGCC
CTAGATGATTATACTATACAATATACCTTGGAACGTCCAGAAAGTTTTTGGAATTCTAAGACGACCTCAGGCGTCCTCTT
CCCGGTTAACAAAGCTTTCTTAGAATCTCAAGGGAAAGACTTCGGTTCTTTGAAGCCAAGTAGTATTCTCTATAATGGTC
CTTATTATTTGAAGAATTTAACTTCAAAATCACAGATTGAACTTGTGAAAAATAAGGAATATTATGATGAAAAGAATGTT
CATATTGATCATGTGAAGTTGACCTATAATGACGGATCAGATCCAGAATCTGTCATCAAGAAATTTGAGAATGGACAATA
TTCATTTGCGACAGTAATGCCAAATAGCTCCACTTATAAGAGTGTGAAAAAGAAATTTGGTGATAATATTGTTTATGGTG
TTCAATACGGAACATCATACTACCTCGGATTCAACATTGATCGTCAGAAGTATAACCATACAGCCAAAACAACAGATGCT
CAGAAATCGTCCACAAAACAAGCGATTTTAAACAAAGACTTCCGTCAAGCTGTAAACTTTGCCTTTGACCGTGAAGCCTA
TGCAGCTCAAACATCGGGAGCAGATGCGGCGACCAAGATTCTTCGGAATACCTTGGTTCCACCGACTTTTGTTCAAGTAA
ATGGAGAAGAGTTCGGTAAGGTTGTTGAGAAACAATTGGTGACCTATGGAGATGAGTGGAAAGATGTCAATCTAGATGAT
GCCCAAACCACTCTCTACAATCAAGAAAAAGCCAAGGCTGAGTTTGCAAAAGCTAAAGAACAACTGCAAAAAGAAGGGGT
AGAATTCCCAATTCATTTGGATTACGTTGTCAGTCAAACAGATAACAGTCAGGTACAACAGGCTAGCTCCTTTAAACAAT
CCGTAGAAGCTGTTCTCGGTGCAGACAATGTTGTCGTAGATATTCAGAAATTATCTGATGATGACTTTAACAATATTACC
TATTTCACAGATACTGCTGCTGAGAAAGATTATGACCTTGCAGGAGGTGGATGGGTTCCAGACTACCAAGATCCATCTAC
TTATTTAGAGAGCTTAAGTCCTGTTAACGGTTCTGTTTTCTACTATCTAGGTGTGGATGCAGGCTCAAATAGTCCTGCTA
TTCCAGCAGTTGACTTTGGGAAGTATGCAGAACTCTTAAAAGATGCCAATGCTGAAGTGAATGATCAAGCTGTACGCTAT
GAGAAATACGCAGCTGCTCAGGCATGGCTAACTGATAGTTCATTGATCTTGCCGACTGTTTCAAATGGTGGAACTCCAAT
GTTGCAACGGACTGTTCCATATAGTCGTGCGGCTTCATGGGTTGGAACAAAAGGAACTGGAACCAACTATAAATATCTTG
AACTGTCAGAAGAAGTCATCAAGACAAAGGATTACGATGCAAGCAAAGAAAAATGGTTAAAAGAAAAGGCTGAATCCAAT
AAAAAAGCTCAAGAAGAATTAAAGAACCACATCGAATCGAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

53.485

100

0.54
  amiA3 Streptococcus thermophilus LMG 18311

53.03

100

0.535
  amiA Streptococcus salivarius strain HSISS4

52.959

100

0.534