Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   LPB404_RS02770 Genome accession   NZ_CP079821
Coordinates   547006..547932 (+) Length   308 a.a.
NCBI ID   WP_023022222.1    Uniprot ID   -
Organism   Streptococcus rubneri strain LPB0404     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 542006..552932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB404_RS02760 (LPB404_02760) amiA3 543457..545442 (+) 1986 WP_219074983.1 peptide ABC transporter substrate-binding protein Regulator
  LPB404_RS02765 (LPB404_02765) amiC 545507..547006 (+) 1500 WP_023022220.1 ABC transporter permease Regulator
  LPB404_RS02770 (LPB404_02770) amiD 547006..547932 (+) 927 WP_023022222.1 oligopeptide ABC transporter permease OppC Regulator
  LPB404_RS02775 (LPB404_02775) amiE 547944..549011 (+) 1068 WP_219074984.1 ABC transporter ATP-binding protein Regulator
  LPB404_RS02780 (LPB404_02780) amiF 549021..549944 (+) 924 WP_219074985.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34548.46 Da        Isoelectric Point: 9.7758

>NTDB_id=589744 LPB404_RS02770 WP_023022222.1 547006..547932(+) (amiD) [Streptococcus rubneri strain LPB0404]
MSTIDKKKFQFVERDDFASETIDAPSYSYWKSVFRQFFKKKSTILMLAVLVAILLMSFVYPMFSNFDYNDVSKVNDFTAR
LNPPSTKAFFGTDNNGKSLFDGVWFGARNSIIISFIATLINVVIGVVIGGIWGVSKSIDRFMMEVYNVISNVPFMLIVIV
LTYSIGAGFWNLILAMTVTGWIGIAYSIRVQIMRYRDLEYNLASRTLGTPTLKIVTKNILPQLVSVIVTTTTQLLPAFIS
TEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTVLVLVSLSFYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=589744 LPB404_RS02770 WP_023022222.1 547006..547932(+) (amiD) [Streptococcus rubneri strain LPB0404]
ATGTCTACAATCGATAAGAAGAAATTCCAATTTGTGGAACGTGATGATTTTGCCTCTGAGACAATTGATGCGCCGTCTTA
CTCCTATTGGAAATCCGTATTCCGTCAATTCTTCAAAAAGAAATCAACCATTTTGATGTTAGCCGTTTTGGTTGCTATTC
TCTTAATGAGTTTTGTATACCCAATGTTTTCAAACTTTGATTACAATGATGTAAGTAAAGTAAATGACTTTACTGCCCGT
TTGAATCCGCCAAGCACCAAGGCCTTCTTTGGTACGGATAACAATGGTAAATCCTTGTTTGATGGAGTTTGGTTTGGTGC
CCGCAATTCGATTATCATCTCCTTTATTGCTACCTTGATCAACGTTGTGATTGGAGTAGTGATCGGCGGGATTTGGGGTG
TGTCAAAATCAATCGACCGCTTCATGATGGAAGTTTATAACGTTATTTCAAATGTTCCATTCATGTTGATTGTTATTGTC
TTGACTTACTCAATTGGTGCTGGTTTCTGGAACTTGATTTTGGCGATGACAGTGACAGGATGGATTGGGATTGCTTACTC
TATCCGTGTCCAAATTATGCGTTACCGCGATTTAGAGTACAACTTGGCCAGTCGCACCTTGGGTACACCAACCCTTAAAA
TTGTGACGAAAAATATTTTGCCACAGTTGGTTTCTGTTATTGTGACGACAACTACACAATTGTTGCCAGCCTTTATTTCG
ACTGAGGCCTTCCTTTCCTTCTTTGGATTGGGATTGCCGATTACAGTTCCAAGTTTAGGTCGTCTTATTTCAGACTACTC
ACAAAACGTGACAACCAATGCGTATCTTTTCTGGATTCCATTGACAGTCTTAGTCTTGGTATCCTTGTCATTCTATATCG
TTGGACAAAACCTTGCAGACGCCAGCGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-84)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

77.597

100

0.776
  amiD Streptococcus thermophilus LMG 18311

76.299

100

0.763
  amiD Streptococcus thermophilus LMD-9

76.299

100

0.763