Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   LPB404_RS02780 Genome accession   NZ_CP079821
Coordinates   549021..549944 (+) Length   307 a.a.
NCBI ID   WP_219074985.1    Uniprot ID   -
Organism   Streptococcus rubneri strain LPB0404     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 544021..554944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB404_RS02765 (LPB404_02765) amiC 545507..547006 (+) 1500 WP_023022220.1 ABC transporter permease Regulator
  LPB404_RS02770 (LPB404_02770) amiD 547006..547932 (+) 927 WP_023022222.1 oligopeptide ABC transporter permease OppC Regulator
  LPB404_RS02775 (LPB404_02775) amiE 547944..549011 (+) 1068 WP_219074984.1 ABC transporter ATP-binding protein Regulator
  LPB404_RS02780 (LPB404_02780) amiF 549021..549944 (+) 924 WP_219074985.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34866.98 Da        Isoelectric Point: 5.9043

>NTDB_id=589746 LPB404_RS02780 WP_219074985.1 549021..549944(+) (amiF) [Streptococcus rubneri strain LPB0404]
MTEKLIEVKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSAGDILYDGKKINGKQTRK
DENELIRKIQMIFQDPAASLNERATVDYIISEGLYNYHLFEDEEDRVRKVKEIMHEVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMEPEFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERKKVLKVYDPDQHDYSTDKPEMVEIKPGHYVWANKAEQKKYKELV

Nucleotide


Download         Length: 924 bp        

>NTDB_id=589746 LPB404_RS02780 WP_219074985.1 549021..549944(+) (amiF) [Streptococcus rubneri strain LPB0404]
ATGACAGAAAAATTAATAGAAGTTAAAGATCTAGAAATTTCCTTCGGTGAAGGAAGTAAAAAATTTGTAGCCGTAAAGAA
TGCAAATTTCTTCATCAATAAAGGGGAAACATTTTCCCTCGTTGGTGAGTCAGGTAGTGGGAAGACAACAATTGGTCGAG
CAATCATTGGTTTGAATGACACTAGTGCAGGTGACATCTTATATGATGGTAAAAAGATCAATGGGAAGCAAACTCGCAAG
GATGAAAATGAATTAATCCGAAAGATTCAAATGATCTTCCAAGACCCAGCAGCTAGCTTGAATGAGCGTGCAACAGTCGA
CTATATTATTTCAGAAGGGTTGTACAATTATCACCTCTTCGAAGATGAAGAAGACCGAGTGCGTAAAGTAAAAGAAATTA
TGCATGAGGTTGGTCTTCTAGCAGAGCATTTGACTCGTTATCCCCATGAATTCTCTGGTGGACAACGTCAACGGATTGGG
ATCGCTCGTGCCTTGGTAATGGAGCCAGAATTTGTTATTGCAGATGAACCAATTTCTGCCCTAGACGTATCAGTTCGTGC
ACAAGTATTGAACCTCCTGAAGAAATTCCAAAAAGAGTTGGGCTTGACTTATCTCTTTATCGCACACGATCTTTCAGTAG
TTCGTTTTATCTCTGATCGTATTGCGGTTATTTACAAAGGTGTTATTGTAGAAGTAGCTGAAACGGAAGAATTGTTTAAC
AACCCAATTCATCCTTATACCCAATCTCTACTATCGGCAGTTCCGATTCCAGATCCAATTCTAGAACGCAAAAAAGTTCT
GAAAGTTTATGATCCTGATCAGCATGATTATTCAACCGACAAACCAGAAATGGTTGAAATCAAGCCAGGACATTACGTTT
GGGCAAATAAAGCAGAACAGAAAAAATATAAAGAACTTGTATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

84.59

99.349

0.84
  amiF Streptococcus thermophilus LMG 18311

84.262

99.349

0.837
  amiF Streptococcus thermophilus LMD-9

83.934

99.349

0.834