Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   LPB404_RS02775 Genome accession   NZ_CP079821
Coordinates   547944..549011 (+) Length   355 a.a.
NCBI ID   WP_219074984.1    Uniprot ID   -
Organism   Streptococcus rubneri strain LPB0404     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 542944..554011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB404_RS02760 (LPB404_02760) amiA3 543457..545442 (+) 1986 WP_219074983.1 peptide ABC transporter substrate-binding protein Regulator
  LPB404_RS02765 (LPB404_02765) amiC 545507..547006 (+) 1500 WP_023022220.1 ABC transporter permease Regulator
  LPB404_RS02770 (LPB404_02770) amiD 547006..547932 (+) 927 WP_023022222.1 oligopeptide ABC transporter permease OppC Regulator
  LPB404_RS02775 (LPB404_02775) amiE 547944..549011 (+) 1068 WP_219074984.1 ABC transporter ATP-binding protein Regulator
  LPB404_RS02780 (LPB404_02780) amiF 549021..549944 (+) 924 WP_219074985.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39764.43 Da        Isoelectric Point: 4.7597

>NTDB_id=589745 LPB404_RS02775 WP_219074984.1 547944..549011(+) (amiE) [Streptococcus rubneri strain LPB0404]
MTNDKNVILSARDIVVEFDVRDRVLTAIRNVSLDLVEGEVMALVGESGSGKSVLTKTFTGMLEENGRITNGTINYRGQEL
TELKSNKDWEEIRGAKIATIFQDPMTSLDPINTIGSQITEVIIKHQGKSAKEAREMAIDYMEKVGIPEAERRFDEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKSLQKEYNFTTIFITHDLGVVASIADKVAVMYAGEIVE
FGKVEEIFYDPRHPYTWSLLSSLPQLSTSKGDLYSIPGTPPSLYSPVKGDAFALRSDYAMQIDFEEHPPVFKVSDTHWAK
TWLLHEDAPKVNKPEIIDNLHEKISAKMGFTTIKD

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=589745 LPB404_RS02775 WP_219074984.1 547944..549011(+) (amiE) [Streptococcus rubneri strain LPB0404]
ATGACAAATGATAAAAATGTAATCTTATCTGCTCGCGATATCGTAGTAGAATTTGATGTTCGGGATCGTGTCTTAACAGC
TATTCGCAATGTCTCTTTGGATCTTGTTGAAGGAGAGGTCATGGCGCTTGTTGGTGAATCAGGTTCTGGTAAATCTGTTT
TGACAAAAACTTTTACAGGAATGTTAGAAGAAAACGGACGAATTACCAATGGGACCATTAATTATCGCGGGCAAGAATTA
ACAGAACTCAAGTCAAACAAAGATTGGGAAGAAATTCGTGGTGCAAAAATTGCAACCATCTTCCAAGACCCAATGACCAG
TTTGGACCCGATTAATACAATCGGATCACAAATTACAGAGGTCATCATTAAACACCAAGGCAAGAGTGCCAAAGAAGCCA
GAGAAATGGCTATTGACTATATGGAAAAGGTGGGAATCCCGGAAGCGGAACGTCGCTTTGATGAATATCCTTTCCAATAT
TCAGGTGGGATGCGCCAACGGATCGTTATTGCTATTGCGCTTGCTTGCCGTCCTGATATCTTGATCTGTGACGAGCCTAC
AACGGCCCTCGACGTAACTATTCAAGCCCAAATCATTGACTTGTTGAAATCATTACAAAAAGAATATAACTTTACAACAA
TATTTATCACCCATGATTTGGGTGTGGTGGCAAGTATTGCAGATAAGGTTGCCGTAATGTATGCTGGTGAAATTGTAGAA
TTTGGTAAAGTAGAAGAAATTTTCTATGACCCAAGACATCCTTATACATGGAGTCTTCTTTCAAGTTTGCCACAGTTGTC
TACTTCTAAAGGTGATTTATATTCTATCCCAGGGACTCCTCCATCATTGTACTCACCGGTAAAAGGGGATGCCTTTGCTT
TGCGCTCAGACTATGCCATGCAAATTGATTTTGAGGAACATCCACCAGTTTTCAAAGTTTCAGATACACATTGGGCTAAA
ACGTGGCTCTTGCATGAAGATGCACCAAAAGTCAATAAACCAGAAATTATTGATAATCTTCATGAAAAAATAAGTGCAAA
AATGGGATTCACTACAATCAAGGACTAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

83.944

100

0.839
  amiE Streptococcus thermophilus LMG 18311

82.254

100

0.823
  amiE Streptococcus thermophilus LMD-9

82.254

100

0.823
  oppD Streptococcus mutans UA159

56.522

97.183

0.549