Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   LPB402_RS04905 Genome accession   NZ_CP079820
Coordinates   1059018..1060259 (+) Length   413 a.a.
NCBI ID   WP_219089370.1    Uniprot ID   -
Organism   Neisseria sicca ATCC 29256     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1054018..1065259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB402_RS04890 (LPB402_04895) - 1055032..1055790 (+) 759 WP_219089374.1 DNA polymerase beta superfamily protein -
  LPB402_RS04895 (LPB402_04900) - 1055805..1056866 (+) 1062 WP_219089372.1 DNA polymerase beta superfamily protein -
  LPB402_RS04900 (LPB402_04905) pilF 1057259..1058938 (+) 1680 WP_070824176.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LPB402_RS04905 (LPB402_04910) pilG 1059018..1060259 (+) 1242 WP_219089370.1 type II secretion system F family protein Machinery gene
  LPB402_RS04910 (LPB402_04915) pilD 1060261..1061148 (+) 888 WP_225905497.1 prepilin peptidase Machinery gene
  LPB402_RS04915 (LPB402_04920) coaE 1061148..1061768 (+) 621 WP_219089368.1 dephospho-CoA kinase -
  LPB402_RS04920 (LPB402_04925) yacG 1061765..1061947 (+) 183 WP_003682475.1 DNA gyrase inhibitor YacG -
  LPB402_RS04925 (LPB402_04930) glyQ 1062029..1062928 (+) 900 WP_003685919.1 glycine--tRNA ligase subunit alpha -
  LPB402_RS04930 (LPB402_04935) lspA 1063080..1063586 (+) 507 WP_219089366.1 signal peptidase II -
  LPB402_RS04935 (LPB402_04940) ispH 1063600..1064568 (+) 969 WP_219089364.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45934.06 Da        Isoelectric Point: 9.9459

>NTDB_id=589691 LPB402_RS04905 WP_219089370.1 1059018..1060259(+) (pilG) [Neisseria sicca ATCC 29256]
MAQAEQKRSLFGSRSKGKRFTFEGKNIETERLVRGEVVAKDEEEARKKLQRRGIRPLRISKVKTARKRRITQEDITVFTR
QLATMMKAGLPLMQAFEIVARGHSNPSMTEMLMQVRSDVEQGSALGKSFSKYPKYFDRFYCNLVSAGESGGVLESLLDKL
AVYKEKTQAIKKKVKTALTYPIAIIVVAIALIFIMMMFVLPAFKEVYANMGAELPGLTQLVMSLSDLFVDYGWIMIILLI
VSAFGLYKLHEKSPTFQKRIDALILRLPVFGTIVRKATIARWARTTSTLFAAGVPLVEVLDSVAGASGNILYEEATQDIR
AKVTQGLSLTSSMQSTDMFPNMVIQMAAIGEESGSLDDMLNKAAEFYEDEVDNSVSRLSHLMEPIIMVVLGSLIGILLIA
MYLPLFNLGNVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=589691 LPB402_RS04905 WP_219089370.1 1059018..1060259(+) (pilG) [Neisseria sicca ATCC 29256]
ATGGCTCAAGCAGAGCAAAAAAGAAGTCTGTTCGGCTCAAGAAGCAAAGGCAAGCGTTTTACATTTGAAGGAAAAAACAT
CGAGACCGAACGTCTTGTTCGTGGTGAAGTAGTTGCCAAAGACGAAGAAGAAGCACGCAAAAAACTCCAACGCAGAGGCA
TTCGCCCTTTGCGTATCAGCAAAGTCAAAACCGCACGCAAACGCCGTATTACCCAAGAAGACATTACTGTGTTCACCCGC
CAACTGGCAACAATGATGAAGGCAGGCTTACCGCTGATGCAGGCATTTGAAATCGTTGCACGCGGCCACTCCAATCCGAG
CATGACCGAAATGCTGATGCAGGTTCGCTCCGATGTCGAACAAGGTAGCGCATTGGGTAAATCGTTCTCTAAATATCCAA
AATATTTCGACCGTTTCTATTGCAATCTGGTCAGCGCAGGCGAGTCCGGCGGCGTACTGGAAAGCCTATTGGACAAACTG
GCTGTCTATAAAGAAAAAACCCAAGCCATTAAGAAAAAGGTTAAAACCGCGCTGACCTACCCGATTGCCATTATCGTGGT
GGCCATCGCGCTTATCTTCATCATGATGATGTTTGTACTGCCAGCCTTTAAAGAAGTTTATGCCAATATGGGTGCAGAGC
TGCCAGGCCTTACCCAACTCGTCATGAGCTTGTCTGATTTATTCGTCGATTACGGCTGGATTATGATCATCCTTTTGATT
GTTTCCGCCTTCGGCCTGTACAAACTCCATGAAAAATCGCCTACCTTCCAAAAACGAATCGATGCTCTGATTTTGAGACT
GCCTGTTTTTGGTACCATTGTCCGAAAAGCGACCATTGCCCGTTGGGCGCGTACGACTTCCACCCTCTTCGCAGCCGGCG
TTCCTTTGGTGGAAGTATTAGATTCAGTTGCAGGCGCATCCGGCAATATTCTCTATGAAGAAGCTACTCAAGACATCCGT
GCCAAGGTAACACAAGGTCTGTCGCTGACATCCAGTATGCAAAGCACGGATATGTTCCCCAATATGGTAATCCAAATGGC
GGCCATCGGCGAAGAGTCAGGCTCTTTGGATGATATGCTGAACAAAGCAGCCGAATTCTACGAAGATGAAGTAGACAACT
CCGTCTCCCGATTGTCTCACTTGATGGAGCCTATTATCATGGTGGTATTGGGTTCGCTCATCGGTATTTTGCTGATTGCC
ATGTATCTGCCGTTGTTTAACTTGGGTAATGTCGTAGGTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(78-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

72.03

97.821

0.705
  pilG Neisseria meningitidis 44/76-A

71.04

97.821

0.695
  pilC Legionella pneumophila strain ERS1305867

46.348

96.126

0.446
  pilC Pseudomonas stutzeri DSM 10701

46

96.852

0.446
  pilC Acinetobacter baumannii D1279779

46.231

96.368

0.446
  pilC Acinetobacter baylyi ADP1

45.729

96.368

0.441
  pilC Vibrio cholerae strain A1552

38.5

96.852

0.373
  pilC Thermus thermophilus HB27

38.363

94.673

0.363