Detailed information NTG0589692

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LPB402_RS04910
• Genome accession: NZ_CP079820
• Coordinates: 1060261..1061148 (+)
• Length: 295 a.a.
• NCBI ID: WP_225905497.1
• Uniprot ID: -
• Organism: Neisseria sicca ATCC 29256
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1055261..1066148

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LPB402_RS04895 (LPB402_04900)	-	1055805..1056866 (+)	1062	WP_219089372.1	DNA polymerase beta superfamily protein	-
LPB402_RS04900 (LPB402_04905)	pilF	1057259..1058938 (+)	1680	WP_070824176.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LPB402_RS04905 (LPB402_04910)	pilG	1059018..1060259 (+)	1242	WP_219089370.1	type II secretion system F family protein	Machinery gene
LPB402_RS04910 (LPB402_04915)	pilD	1060261..1061148 (+)	888	WP_225905497.1	prepilin peptidase	Machinery gene
LPB402_RS04915 (LPB402_04920)	coaE	1061148..1061768 (+)	621	WP_219089368.1	dephospho-CoA kinase	-
LPB402_RS04920 (LPB402_04925)	yacG	1061765..1061947 (+)	183	WP_003682475.1	DNA gyrase inhibitor YacG	-
LPB402_RS04925 (LPB402_04930)	glyQ	1062029..1062928 (+)	900	WP_003685919.1	glycine--tRNA ligase subunit alpha	-
LPB402_RS04930 (LPB402_04935)	lspA	1063080..1063586 (+)	507	WP_219089366.1	signal peptidase II	-
LPB402_RS04935 (LPB402_04940)	ispH	1063600..1064568 (+)	969	WP_219089364.1	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	-
LPB402_RS04940 (LPB402_04945)	ftsZ	1064688..1065887 (-)	1200	WP_070585169.1	cell division protein FtsZ	-

Sequence

Protein

• Length: 295 a.a.
• Molecular weight: 32350.48 Da
• Isoelectric Point: 7.6831

>NTDB_id=589692 LPB402_RS04910 WP_225905497.1 1060261..1061148(+) (pilD) [Neisseria sicca ATCC 29256]
MLDSIYSAIDALSVLAPFAIPLAVILGLLIGSFLNVVIYRTPIMMEREWTQFSKEHLGIELTDEEKQPFNLRKPDSHCPK
CGSPIRVWQNIPILSYVFLGGKCHACKTHISIRYPLIELLTGVLFGIVAWQYGWSWATIGGLILTAILIALTFIDTDTQY
LPDSLTQPLIWIGLLFNLNDTFVPLHSAVWGAIAGYMSLYTLCAVYKLLTGKIGMGNGDFKLLAALGAWLGVGILPVLIF
MAALVGLLGALIARVGKGQYFAFGPSLAVAGWIILVANAPITQLVQWWLVQSGFR

Nucleotide

• Length: 888 bp

>NTDB_id=589692 LPB402_RS04910 WP_225905497.1 1060261..1061148(+) (pilD) [Neisseria sicca ATCC 29256]
ATGCTTGATAGTATTTACTCTGCCATCGACGCCCTCTCCGTTCTTGCGCCATTCGCTATTCCTTTAGCCGTTATTTTAGG
ATTACTGATTGGTAGCTTTCTGAACGTCGTCATTTATCGCACGCCGATAATGATGGAGCGTGAATGGACACAATTTTCCA
AAGAGCATTTGGGCATCGAGCTGACAGACGAAGAAAAACAGCCATTTAATCTGCGTAAACCGGATTCACACTGCCCAAAA
TGCGGAAGTCCGATCAGAGTTTGGCAAAATATACCCATCCTCAGCTATGTTTTCCTAGGTGGGAAATGCCACGCCTGCAA
AACCCATATCAGCATACGCTATCCGTTGATTGAGCTGCTGACAGGTGTCTTATTCGGTATTGTCGCGTGGCAATACGGCT
GGTCATGGGCAACTATTGGTGGATTGATTCTGACTGCCATATTGATAGCGCTGACCTTTATCGATACCGATACGCAATAT
TTGCCCGACAGCCTGACTCAGCCCCTAATTTGGATCGGCCTGCTGTTTAATCTGAATGATACATTCGTTCCCCTGCATTC
AGCCGTTTGGGGTGCGATTGCAGGCTATATGAGCCTTTATACTTTATGCGCCGTCTATAAACTTCTGACCGGTAAAATCG
GCATGGGCAATGGCGACTTCAAACTTTTGGCCGCACTCGGTGCATGGCTGGGCGTAGGAATTTTGCCTGTTCTGATCTTT
ATGGCTGCCTTAGTCGGGCTGTTAGGCGCACTCATCGCCCGCGTCGGCAAAGGCCAATATTTTGCTTTTGGTCCCAGCCT
CGCTGTAGCAGGATGGATTATTTTGGTTGCCAATGCACCTATTACCCAACTGGTACAATGGTGGCTCGTACAATCAGGAT
TCCGATAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (142-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-132)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	70.671	95.932	0.678
pilD	Vibrio cholerae strain A1552	48.077	88.136	0.424
pilD	Vibrio campbellii strain DS40M4	47.308	88.136	0.417
pilD	Acinetobacter baumannii D1279779	47.41	85.085	0.403
pilD	Acinetobacter nosocomialis M2	47.41	85.085	0.403