Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LPB402_RS04290 Genome accession   NZ_CP079820
Coordinates   900579..902075 (+) Length   498 a.a.
NCBI ID   WP_107768914.1    Uniprot ID   -
Organism   Neisseria sicca ATCC 29256     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 895579..907075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB402_RS04275 (LPB402_04280) - 897692..898573 (-) 882 WP_219089459.1 lysophospholipid acyltransferase family protein -
  LPB402_RS04280 (LPB402_04285) metK 898966..900135 (+) 1170 WP_107768913.1 methionine adenosyltransferase -
  LPB402_RS04285 (LPB402_04290) - 900245..900565 (+) 321 WP_003684455.1 accessory factor UbiK family protein -
  LPB402_RS04290 (LPB402_04295) comM 900579..902075 (+) 1497 WP_107768914.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LPB402_RS04295 (LPB402_04300) - 902230..903330 (+) 1101 WP_107768915.1 SPOR domain-containing protein -
  LPB402_RS04300 (LPB402_04305) dsbA1 903342..903983 (+) 642 WP_107768929.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  LPB402_RS04305 (LPB402_04310) - 904028..904852 (+) 825 WP_107792448.1 undecaprenyl-diphosphate phosphatase -
  LPB402_RS04310 (LPB402_04315) comP 904932..905426 (-) 495 WP_219089457.1 type IV pilin protein Machinery gene
  LPB402_RS04315 (LPB402_04320) comE 905621..905908 (-) 288 WP_036472233.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53807.84 Da        Isoelectric Point: 7.5739

>NTDB_id=589686 LPB402_RS04290 WP_107768914.1 900579..902075(+) (comM) [Neisseria sicca ATCC 29256]
MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKESRDRVRAAIIQSGFDFPAKKITVNLAPADLPKESGR
FDLPIALGILAASGQINPEKLSQYEFAGELALSGLLRPVRGALAMAWQGMQAGRSFVLPQENAEQAAVMRGIAVYGARSL
GEVAAHLNGIEPLTQTECKLTQRPSEQSKIPDLADVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
TEDELVEVWALRSLLPNHQQQLDSNRPFRSPHHSASSAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPSKPCRCTPESVARYRNKISGPLLDRIDLTIEVPSLSAAELMQQ
EAGESSATVLERVTAARKIQYNRQGKVNAELSVGELDGKARIQKEAQEALGTMLEKLSLSARSFHRIMRVARTLADLAGD
EEVSKTHVMKAIGFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=589686 LPB402_RS04290 WP_107768914.1 900579..902075(+) (comM) [Neisseria sicca ATCC 29256]
ATGTCACTTGCTTTGGTTTACAGCCGCGCCTTAAGCGGCATGAATGCGCCGTTGGTCGAAGTGGAAGCCCACCTTGCCAA
CGGCTTGCCACATTTCAATATCGTCGGTTTGCCCGATACTGAAGTCAAAGAAAGCCGCGACCGCGTGCGTGCCGCCATCA
TCCAAAGCGGCTTCGACTTTCCCGCCAAGAAAATTACCGTCAACCTCGCACCGGCCGACCTCCCAAAAGAATCCGGCCGT
TTCGATTTGCCGATTGCCTTAGGTATTCTTGCCGCATCGGGACAAATCAATCCTGAAAAGCTCTCGCAATATGAGTTTGC
CGGAGAATTGGCGCTGTCCGGCTTGCTGCGTCCCGTACGCGGCGCGCTGGCCATGGCATGGCAGGGAATGCAGGCAGGCC
GTTCGTTCGTATTGCCACAAGAAAATGCCGAACAGGCTGCCGTTATGCGCGGTATCGCGGTTTATGGTGCGCGTTCTTTG
GGCGAAGTGGCCGCGCATTTAAACGGCATCGAACCGTTGACACAAACCGAATGCAAGCTGACGCAAAGGCCGTCTGAACA
AAGTAAAATTCCTGATTTAGCCGATGTTAAAGGCCAGCATACTGCCCGCCTTGCCTTGGAAATCGCAGCGGCAGGCGGAC
ACAGCTTGTTGATGATGGGGCCGCCAGGAACGGGCAAATCCATGCTTTCGCAACGTTTGCCTGGCATCCTTCCTCCTTTG
ACCGAAGACGAATTAGTCGAAGTATGGGCATTGCGTTCGCTCCTGCCCAACCATCAACAGCAACTCGACAGCAACCGTCC
TTTCCGCAGCCCTCATCACAGCGCCAGCTCGGCTGCTATGGTAGGTGGTGGTTCAGACCCGCGTCCGGGCGAAATTTCAT
TGGCGCATCACGGTGTGTTGTTTTTAGACGAATTGCCCGAGTTTGACCGTAAAGTATTAGAAGTGTTGCGCGAACCTTTA
GAAAACGGCGAAATCCATATTTCCCGCGCCGCACGCCAAGCCGTTTATCCGGCCAAGTTCCAGCTCGTCGCCGCCATGAA
TCCCTGCCCTTGCGGCTATCTTGGCCATCCGTCCAAACCTTGCCGCTGCACGCCTGAAAGCGTTGCCCGCTACCGCAACA
AAATTTCAGGGCCATTGCTCGACCGTATTGATTTAACTATCGAAGTACCCAGCCTTTCCGCTGCCGAGTTGATGCAACAA
GAGGCAGGCGAATCCAGTGCTACCGTATTGGAACGCGTTACCGCCGCACGCAAAATCCAATACAACCGGCAAGGCAAAGT
CAATGCAGAACTGAGTGTCGGCGAGCTCGATGGCAAAGCCCGCATCCAAAAAGAAGCGCAAGAAGCCTTGGGAACCATGC
TCGAAAAACTGTCCCTTTCCGCCCGAAGTTTCCACCGTATCATGCGCGTCGCCCGTACGCTGGCCGATTTGGCAGGCGAC
GAAGAAGTCAGCAAAACCCATGTGATGAAAGCCATCGGCTTCCGTCGCGCCCTTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.789

100

0.532
  comM Vibrio campbellii strain DS40M4

52

100

0.522
  comM Haemophilus influenzae Rd KW20

49.9

100

0.5
  comM Glaesserella parasuis strain SC1401

49.402

100

0.498
  comM Legionella pneumophila str. Paris

46.68

100

0.48
  comM Legionella pneumophila strain ERS1305867

46.68

100

0.48
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.96

100

0.446