Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   LPB402_RS04310 Genome accession   NZ_CP079820
Coordinates   904932..905426 (-) Length   164 a.a.
NCBI ID   WP_219089457.1    Uniprot ID   -
Organism   Neisseria sicca ATCC 29256     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 899932..910426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB402_RS04285 (LPB402_04290) - 900245..900565 (+) 321 WP_003684455.1 accessory factor UbiK family protein -
  LPB402_RS04290 (LPB402_04295) comM 900579..902075 (+) 1497 WP_107768914.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LPB402_RS04295 (LPB402_04300) - 902230..903330 (+) 1101 WP_107768915.1 SPOR domain-containing protein -
  LPB402_RS04300 (LPB402_04305) dsbA1 903342..903983 (+) 642 WP_107768929.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  LPB402_RS04305 (LPB402_04310) - 904028..904852 (+) 825 WP_107792448.1 undecaprenyl-diphosphate phosphatase -
  LPB402_RS04310 (LPB402_04315) comP 904932..905426 (-) 495 WP_219089457.1 type IV pilin protein Machinery gene
  LPB402_RS04315 (LPB402_04320) comE 905621..905908 (-) 288 WP_036472233.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17920.96 Da        Isoelectric Point: 10.0610

>NTDB_id=589688 LPB402_RS04310 WP_219089457.1 904932..905426(-) (comP) [Neisseria sicca ATCC 29256]
MYLKAFDGKRNGAAVQRGYSLIQLLVVMLLVSILATAALTAYRESVRSANLRAAHAALLENARFMEQFYAKKGSFKLTST
KWPELPVKEAGGFCIRMNGQAKGILEGKFTLKAVALDREAEPRVLRLNESLTAVVCGKMKVKGSCTDGEEIFRGNDAECK
PFGA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=589688 LPB402_RS04310 WP_219089457.1 904932..905426(-) (comP) [Neisseria sicca ATCC 29256]
ATGTACTTAAAAGCATTTGACGGAAAACGGAATGGGGCAGCTGTACAGAGGGGCTACTCCTTGATACAGCTGTTGGTGGT
GATGCTGCTGGTTTCGATATTGGCGACGGCGGCATTGACTGCCTATCGGGAGTCAGTCCGTTCGGCCAACTTGCGTGCGG
CTCATGCCGCCCTGCTGGAAAATGCGCGCTTTATGGAGCAGTTCTATGCGAAAAAGGGCAGCTTTAAGCTGACGTCGACG
AAGTGGCCGGAGCTGCCGGTGAAGGAGGCGGGCGGTTTCTGCATTCGGATGAACGGTCAGGCTAAGGGGATCCTGGAAGG
GAAGTTTACCCTGAAGGCGGTGGCTCTGGACAGGGAGGCGGAGCCGAGAGTATTACGCTTGAACGAGTCGTTGACGGCGG
TAGTGTGCGGGAAGATGAAGGTGAAGGGAAGCTGTACGGACGGTGAGGAGATATTTAGGGGTAATGATGCGGAGTGTAAA
CCATTTGGCGCATAG

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(41-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

93.827

98.78

0.927
  comP Neisseria meningitidis 8013

51.02

89.634

0.457
  comP Neisseria gonorrhoeae MS11

51.034

88.415

0.451