Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   LPB402_RS04315 Genome accession   NZ_CP079820
Coordinates   905621..905908 (-) Length   95 a.a.
NCBI ID   WP_036472233.1    Uniprot ID   A0A4D7WS56
Organism   Neisseria sicca ATCC 29256     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 900621..910908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB402_RS04295 (LPB402_04300) - 902230..903330 (+) 1101 WP_107768915.1 SPOR domain-containing protein -
  LPB402_RS04300 (LPB402_04305) dsbA1 903342..903983 (+) 642 WP_107768929.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  LPB402_RS04305 (LPB402_04310) - 904028..904852 (+) 825 WP_107792448.1 undecaprenyl-diphosphate phosphatase -
  LPB402_RS04310 (LPB402_04315) comP 904932..905426 (-) 495 WP_219089457.1 type IV pilin protein Machinery gene
  LPB402_RS04315 (LPB402_04320) comE 905621..905908 (-) 288 WP_036472233.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9763.42 Da        Isoelectric Point: 10.4923

>NTDB_id=589689 LPB402_RS04315 WP_036472233.1 905621..905908(-) (comE) [Neisseria sicca ATCC 29256]
MKKFLFGAFAAVCAAFSLAAVNINTASSAELEALPGIGPAKAKSIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKAEAT
VSSAAPKAAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=589689 LPB402_RS04315 WP_036472233.1 905621..905908(-) (comE) [Neisseria sicca ATCC 29256]
ATGAAGAAATTTTTATTTGGTGCATTTGCCGCCGTCTGTGCAGCATTCTCTTTGGCCGCCGTGAATATCAATACCGCGTC
TTCTGCCGAACTGGAGGCTTTGCCGGGTATCGGTCCGGCTAAGGCGAAATCGATTGTGGAATACCGTCAGAAGAACGGTG
CGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATCGGTGATGCGGTGCTGAACAAGTTAAAGGCGGAGGCGACG
GTTTCTTCTGCCGCGCCTAAGGCCGCACAGCCTGCCGTGAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4D7WS56

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.321

85.263

0.463
  comEA Vibrio parahaemolyticus RIMD 2210633

44.186

90.526

0.4