Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   LPB402_RS04300 Genome accession   NZ_CP079820
Coordinates   903342..903983 (+) Length   213 a.a.
NCBI ID   WP_107768929.1    Uniprot ID   -
Organism   Neisseria sicca ATCC 29256     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 898342..908983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB402_RS04280 (LPB402_04285) metK 898966..900135 (+) 1170 WP_107768913.1 methionine adenosyltransferase -
  LPB402_RS04285 (LPB402_04290) - 900245..900565 (+) 321 WP_003684455.1 accessory factor UbiK family protein -
  LPB402_RS04290 (LPB402_04295) comM 900579..902075 (+) 1497 WP_107768914.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LPB402_RS04295 (LPB402_04300) - 902230..903330 (+) 1101 WP_107768915.1 SPOR domain-containing protein -
  LPB402_RS04300 (LPB402_04305) dsbA1 903342..903983 (+) 642 WP_107768929.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  LPB402_RS04305 (LPB402_04310) - 904028..904852 (+) 825 WP_107792448.1 undecaprenyl-diphosphate phosphatase -
  LPB402_RS04310 (LPB402_04315) comP 904932..905426 (-) 495 WP_219089457.1 type IV pilin protein Machinery gene
  LPB402_RS04315 (LPB402_04320) comE 905621..905908 (-) 288 WP_036472233.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23761.51 Da        Isoelectric Point: 9.8951

>NTDB_id=589687 LPB402_RS04300 WP_107768929.1 903342..903983(+) (dsbA1) [Neisseria sicca ATCC 29256]
MKQRIKQTIAALSLSLLSLSAQAATEGVDYTVLSRSILQQQAGKIEVLEFFGYFCVHCYHLDPVLLQHSKTFAKDVSLRT
EHVVWMPEMLGLAKVAAAVNLSGLKYQANPVIFKAVYEQKINLADTNVFRSWVGKQTSFDSQKLLQAYNSPTAASAAAKM
QQLTETYRIENTPTVIVGGKYKVNFNGTDWKAGMKTIDELIVKVRREQSSKPL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=589687 LPB402_RS04300 WP_107768929.1 903342..903983(+) (dsbA1) [Neisseria sicca ATCC 29256]
ATGAAGCAGCGTATAAAACAAACCATTGCCGCACTCAGCCTGAGCCTGCTCAGTCTGAGTGCGCAAGCTGCTACCGAGGG
CGTGGACTATACTGTCCTCAGTCGCTCTATTCTGCAGCAACAAGCTGGAAAAATTGAAGTACTTGAGTTTTTCGGCTATT
TCTGCGTTCATTGTTACCATCTCGATCCAGTTTTGTTGCAACACAGCAAAACCTTTGCCAAAGATGTTTCCTTACGGACA
GAACACGTCGTTTGGATGCCTGAAATGTTAGGCTTGGCCAAAGTAGCCGCTGCCGTTAATCTTTCAGGTTTGAAATATCA
AGCCAATCCAGTCATCTTCAAAGCAGTTTACGAACAAAAAATCAACCTGGCTGATACCAATGTATTCCGATCATGGGTGG
GTAAACAGACGAGTTTTGACAGTCAAAAACTGCTTCAAGCCTATAACAGTCCTACTGCCGCATCGGCTGCTGCAAAAATG
CAGCAATTGACGGAAACTTATCGAATTGAAAACACACCAACTGTCATCGTCGGTGGTAAATACAAAGTCAATTTCAACGG
TACCGACTGGAAAGCCGGTATGAAAACCATAGACGAGCTCATCGTCAAAGTCCGCCGCGAACAATCCTCAAAACCACTTT
AA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(44-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

58.289

87.793

0.512
  dsbA2 Neisseria meningitidis MC58

57.754

87.793

0.507