Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   K210_RS09160 Genome accession   NC_021354
Coordinates   403068..403589 (-) Length   173 a.a.
NCBI ID   WP_016357165.1    Uniprot ID   -
Organism   Erysipelothrix rhusiopathiae SY1027     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 398068..408589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K210_RS01870 - 398469..400109 (+) 1641 WP_252856519.1 hypothetical protein -
  K210_RS01875 (K210_02055) brnQ 400134..401426 (-) 1293 WP_003773605.1 branched-chain amino acid transport system II carrier protein -
  K210_RS01880 (K210_02060) - 401490..402002 (-) 513 WP_016357163.1 hypothetical protein -
  K210_RS09155 (K210_02065) - 402349..403071 (-) 723 WP_016357164.1 nicotinamide-nucleotide amidohydrolase family protein -
  K210_RS09160 (K210_02070) cinA 403068..403589 (-) 522 WP_016357165.1 molybdopterin-binding protein Machinery gene
  K210_RS01890 (K210_02075) - 403776..404318 (+) 543 WP_013852956.1 carbonic anhydrase -
  K210_RS01895 (K210_02080) - 404480..406063 (+) 1584 WP_013852957.1 ATP-binding cassette domain-containing protein -
  K210_RS01900 (K210_02085) - 406084..407244 (+) 1161 WP_013852958.1 VanZ family protein -
  K210_RS01905 (K210_02090) - 407298..407528 (-) 231 WP_013852959.1 hypothetical protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19005.00 Da        Isoelectric Point: 4.9711

>NTDB_id=58963 K210_RS09160 WP_016357165.1 403068..403589(-) (cinA) [Erysipelothrix rhusiopathiae SY1027]
MKAEIICVGTELLLGDVVNTNATYIAQQLATDGIFCYHQSVVGDNPKRLKHSFSEALSRSDVILLTGGLGPTYDDLTKEI
IAEMLGLPLILHQPSMDKLESYFKTSGKSMTENNIKQAMIPEGAFVFENMCGTAPGIGIETNTKTVILLPGPPREMKMMF
ETSVNDYLKQKQT

Nucleotide


Download         Length: 522 bp        

>NTDB_id=58963 K210_RS09160 WP_016357165.1 403068..403589(-) (cinA) [Erysipelothrix rhusiopathiae SY1027]
ATGAAAGCAGAAATTATTTGTGTTGGAACTGAATTGTTGTTGGGGGATGTTGTGAATACAAATGCAACGTATATTGCCCA
ACAATTAGCGACTGATGGAATATTTTGTTACCATCAAAGTGTTGTGGGTGATAATCCAAAGCGTCTTAAGCATAGTTTTT
CGGAAGCTTTAAGTCGTAGTGATGTCATTCTTCTTACAGGTGGACTTGGACCAACTTATGACGATCTTACAAAAGAAATT
ATCGCTGAAATGCTTGGTCTTCCTCTTATACTTCACCAACCTTCCATGGATAAGCTTGAATCGTATTTTAAAACAAGTGG
TAAATCTATGACCGAAAACAATATTAAGCAAGCGATGATTCCCGAAGGTGCTTTTGTATTTGAAAACATGTGTGGTACCG
CTCCAGGCATTGGTATTGAAACCAACACCAAAACTGTTATATTACTTCCGGGACCTCCACGTGAAATGAAAATGATGTTT
GAAACATCTGTTAATGATTACTTAAAACAAAAACAAACGTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(4-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

49.412

98.266

0.486
  cinA Streptococcus suis isolate S10

45.087

100

0.451
  cinA Streptococcus mitis SK321

46.25

92.486

0.428
  cinA Streptococcus pneumoniae TIGR4

46.25

92.486

0.428
  cinA Streptococcus mitis NCTC 12261

45.625

92.486

0.422
  cinA Streptococcus pneumoniae Rx1

45.625

92.486

0.422
  cinA Streptococcus pneumoniae R6

45.625

92.486

0.422
  cinA Streptococcus mutans UA159

42.69

98.844

0.422
  cinA Streptococcus pneumoniae D39

45

92.486

0.416

Multiple sequence alignment