Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KEC60_RS01935 Genome accession   NZ_CP079237
Coordinates   392510..393736 (-) Length   408 a.a.
NCBI ID   WP_284649320.1    Uniprot ID   -
Organism   Photobacterium damselae strain Pdd1608     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 387510..398736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEC60_RS01910 (KEC60_01910) mutT 389363..389770 (-) 408 WP_069530749.1 8-oxo-dGTP diphosphatase MutT -
  KEC60_RS01915 (KEC60_01915) yacG 389823..390032 (-) 210 WP_005297592.1 DNA gyrase inhibitor YacG -
  KEC60_RS01920 (KEC60_01920) zapD 390041..390778 (-) 738 WP_005297594.1 cell division protein ZapD -
  KEC60_RS01925 (KEC60_01925) coaE 390855..391448 (-) 594 WP_284649318.1 dephospho-CoA kinase -
  KEC60_RS01930 (KEC60_01930) pilD 391450..392328 (-) 879 WP_284649319.1 A24 family peptidase Machinery gene
  KEC60_RS01935 (KEC60_01935) pilC 392510..393736 (-) 1227 WP_284649320.1 type II secretion system F family protein Machinery gene
  KEC60_RS01940 (KEC60_01940) pilB 393802..395493 (-) 1692 WP_284649321.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KEC60_RS01945 (KEC60_01945) pilA 395500..395892 (-) 393 WP_284649322.1 pilin Machinery gene
  KEC60_RS01950 (KEC60_01950) ampD 396279..396857 (+) 579 WP_284649323.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  KEC60_RS01955 (KEC60_01955) pdhR 397217..397990 (+) 774 WP_284649324.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45048.21 Da        Isoelectric Point: 9.9664

>NTDB_id=588351 KEC60_RS01935 WP_284649320.1 392510..393736(-) (pilC) [Photobacterium damselae strain Pdd1608]
MAQLAANKIRYYRWRGVNQGGKKITGVTLGFQEQEVRSQLTEQMIQVKKIKRTNPSTLDKIRNQMKSSDVTAITRQLATM
IESGVPIVQALKLMACSHHKAEVRAVLTQVNTQVEAGASLSKALKSSSPLFDNFYCDLVATGEETGYLGQVFVRLATYRE
KSEAMRKKVIKAMIYPSMVMLTAISVTILMLVFVIPQFAAIFGSFGAELPWFTRQVLKASDFLINYGGYLAVGLLLALVL
YRYSYKRSYSFRLRMARLSLRLPIIGNVVLKATIARFARTLATTFSAGIPLLTGLQSAGKTAGNLHIEEAIMEAHTSAAA
GMPLYLSLRQCNVFPELMLQMTMIGEESGSLDDMLNKMASLYENDVDNIVDNLGQILEPLIIIVLGVLIGGLLVAMYMPI
FTLMSVIG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=588351 KEC60_RS01935 WP_284649320.1 392510..393736(-) (pilC) [Photobacterium damselae strain Pdd1608]
ATGGCACAGTTAGCCGCTAATAAAATCCGTTATTATCGCTGGCGAGGGGTAAACCAAGGCGGCAAGAAAATCACAGGCGT
AACCTTAGGTTTTCAAGAACAAGAAGTGCGATCGCAACTGACCGAGCAGATGATCCAAGTAAAAAAGATCAAGCGCACCA
ACCCTTCTACGCTCGATAAAATCCGCAATCAGATGAAAAGTAGCGATGTAACGGCTATTACTCGCCAACTTGCGACCATG
ATCGAATCTGGAGTTCCGATTGTGCAAGCTCTGAAGCTAATGGCCTGTAGCCACCATAAAGCAGAAGTGCGCGCGGTATT
AACTCAGGTCAACACCCAAGTAGAAGCCGGAGCCTCACTGTCAAAAGCGCTAAAATCCAGCTCGCCGCTGTTTGATAATT
TCTACTGTGACTTAGTCGCAACCGGGGAAGAAACCGGGTATCTTGGTCAGGTATTTGTTCGCTTAGCCACGTATCGAGAA
AAAAGCGAGGCGATGCGAAAAAAAGTGATTAAGGCGATGATTTACCCATCCATGGTGATGCTAACGGCCATCAGTGTCAC
TATCTTAATGCTGGTCTTCGTTATCCCTCAATTTGCCGCTATTTTTGGCAGTTTTGGCGCAGAACTTCCTTGGTTTACTC
GCCAAGTATTAAAAGCCTCGGATTTCCTAATTAACTACGGGGGATACTTAGCTGTAGGTTTGCTGCTTGCACTCGTGCTT
TATCGTTATAGCTATAAACGGTCCTATTCGTTTCGGTTACGGATGGCTAGGTTAAGCTTACGCCTGCCCATTATCGGTAA
CGTCGTACTCAAAGCAACTATTGCCCGTTTTGCTCGAACCCTTGCGACCACCTTTAGTGCCGGTATTCCACTTCTAACAG
GTCTACAGTCGGCTGGTAAAACCGCAGGTAACTTACATATAGAAGAGGCCATTATGGAAGCACATACCAGTGCAGCGGCG
GGGATGCCACTCTATTTATCTTTGCGCCAATGCAATGTTTTTCCAGAGCTTATGTTACAGATGACCATGATCGGGGAAGA
ATCCGGCTCTCTTGACGATATGCTCAATAAAATGGCAAGCCTATATGAAAACGATGTCGATAATATCGTTGATAACCTCG
GCCAAATTTTAGAGCCTTTGATCATCATTGTGCTTGGCGTTCTAATTGGCGGTTTACTCGTGGCAATGTATATGCCGATC
TTCACCCTAATGAGCGTTATTGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

55.087

98.775

0.544
  pilC Vibrio cholerae strain A1552

55.5

98.039

0.544
  pilG Neisseria meningitidis 44/76-A

42.222

99.265

0.419
  pilG Neisseria gonorrhoeae MS11

42.222

99.265

0.419
  pilC Acinetobacter baumannii D1279779

40.196

100

0.402
  pilC Pseudomonas stutzeri DSM 10701

40.049

99.755

0.4
  pilC Acinetobacter baylyi ADP1

39.798

97.304

0.387
  pilC Legionella pneumophila strain ERS1305867

37.94

97.549

0.37