Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   KEC60_RS01005 Genome accession   NZ_CP079237
Coordinates   211254..212981 (+) Length   575 a.a.
NCBI ID   WP_370467786.1    Uniprot ID   -
Organism   Photobacterium damselae strain Pdd1608     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 206254..217981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEC60_RS00985 (KEC60_00985) pilM 208483..209481 (+) 999 WP_284649271.1 type IV pilus assembly protein PilM -
  KEC60_RS00990 (KEC60_00990) - 209478..210119 (+) 642 WP_284649272.1 PilN domain-containing protein -
  KEC60_RS00995 (KEC60_00995) - 210116..210706 (+) 591 WP_284649273.1 type 4a pilus biogenesis protein PilO -
  KEC60_RS01000 (KEC60_01000) - 210715..211230 (+) 516 WP_036764704.1 pilus assembly protein PilP -
  KEC60_RS01005 (KEC60_01005) pilQ 211254..212981 (+) 1728 WP_370467786.1 type IV pilus secretin PilQ Machinery gene
  KEC60_RS01010 (KEC60_01010) aroK 213311..213829 (+) 519 WP_036765246.1 shikimate kinase AroK -
  KEC60_RS01015 (KEC60_01015) aroB 213859..214938 (+) 1080 WP_005302661.1 3-dehydroquinate synthase -
  KEC60_RS01020 (KEC60_01020) - 214953..216461 (+) 1509 WP_136039529.1 SPOR domain-containing protein -
  KEC60_RS01025 (KEC60_01025) dam 216569..217411 (+) 843 WP_065172417.1 adenine-specific DNA-methyltransferase -
  KEC60_RS01030 (KEC60_01030) - 217395..217592 (-) 198 WP_036764707.1 DUF2970 domain-containing protein -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 62724.21 Da        Isoelectric Point: 4.9002

>NTDB_id=588347 KEC60_RS01005 WP_370467786.1 211254..212981(+) (pilQ) [Photobacterium damselae strain Pdd1608]
MKRMLSVSLGWQRCWVVMLCCWLGLSQAAIAAGMNIVNNQITDLDFKRDNRGRGVLTIQLAKPQSLVDMRRSGKQLHIDI
FDTAIKDDMLYVLDVVDFATVVRSIETFRTEKGSKLILNMAGVFDYDYQLKGSRLEVVLNAQKKKASSTAKAKQGKIDYK
GKPISINFQDVPVRNVLQLVAEYNDFNLVVSDTVQGNVTLRLDDVPWPQVLDIILQSKGLDKRVQGSVVLIAPKSELATN
ERQEMEAKRKEDELASLRSELIQINYAKAGDIADLLLGTKDGVSMLSQRGSLHVDERTNAIIIKDIPESIDSIEDIITAL
DIPVKQVQIEARIVTVDEGDIDELGVRWGVVNQNGSTTIGGSIEGNLASSGLLGDDATVDDFLNVNLGAITPGASSIAFQ
VAKLGDILLDLELSALQAESKAEIISSPRLVTTNKKAAYIEQGTEIPYLEAASSGAVSVDFKKAVLSLMVTPQITPDDKL
VLDLLVTQDKVGETVVTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIYQHQVNNSVRKVPLLGDIPGLGVLFRHKLQEMG
KRELLIFVTPKIITQ

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=588347 KEC60_RS01005 WP_370467786.1 211254..212981(+) (pilQ) [Photobacterium damselae strain Pdd1608]
ATGAAAAGGATGTTATCGGTCAGCTTGGGTTGGCAACGTTGTTGGGTAGTTATGTTGTGCTGTTGGCTTGGTCTCTCCCA
AGCTGCCATTGCTGCTGGCATGAATATTGTGAATAACCAAATCACCGACTTAGATTTTAAGCGTGATAACCGTGGACGAG
GCGTGCTCACTATTCAGTTAGCCAAACCTCAATCTTTGGTTGATATGCGCCGTTCAGGGAAGCAATTACACATCGATATC
TTTGATACCGCGATTAAAGATGACATGTTGTATGTACTCGATGTGGTCGACTTTGCAACGGTTGTCCGTTCGATTGAAAC
ATTTCGCACCGAGAAAGGTAGCAAGCTTATTCTCAATATGGCTGGCGTATTTGATTATGATTACCAATTAAAAGGCTCTC
GTCTTGAAGTTGTTTTGAACGCCCAGAAAAAGAAAGCCAGCAGTACAGCCAAGGCTAAGCAAGGCAAAATTGATTATAAA
GGTAAGCCCATCTCCATTAACTTCCAAGATGTTCCTGTGCGTAACGTATTGCAGTTGGTTGCCGAATATAATGATTTTAA
TCTCGTGGTTTCCGATACTGTGCAGGGTAATGTGACCTTACGTCTTGATGATGTGCCTTGGCCACAAGTGCTCGATATTA
TTTTGCAATCAAAAGGGTTGGATAAACGAGTTCAAGGTTCTGTGGTACTGATTGCGCCAAAATCTGAGTTGGCAACCAAT
GAGCGTCAAGAGATGGAAGCCAAACGTAAAGAAGATGAGTTAGCTTCGCTTCGTTCGGAGCTGATTCAAATTAATTACGC
TAAAGCAGGAGATATCGCAGACCTTTTACTCGGGACTAAAGATGGAGTCAGTATGCTATCTCAACGCGGGTCTTTGCATG
TTGATGAGCGTACTAATGCCATAATCATTAAAGATATTCCTGAGAGTATTGATAGCATTGAAGATATTATCACGGCACTA
GATATTCCCGTTAAACAGGTTCAGATAGAAGCTCGTATTGTTACTGTTGATGAAGGGGATATTGACGAGTTAGGGGTACG
TTGGGGTGTCGTTAATCAAAACGGTAGTACAACCATTGGGGGCTCAATTGAAGGTAACTTGGCCAGTTCGGGCTTATTGG
GTGATGACGCGACTGTTGATGATTTCTTAAATGTAAATTTAGGTGCAATTACTCCTGGGGCATCGAGTATTGCATTTCAG
GTGGCAAAACTGGGCGATATTTTGCTCGATCTTGAATTATCCGCTCTACAGGCAGAATCGAAAGCAGAGATTATTTCTAG
TCCTCGATTAGTAACCACCAATAAAAAAGCGGCTTACATCGAACAAGGTACAGAGATCCCTTATTTAGAAGCGGCATCTA
GTGGTGCGGTATCGGTAGACTTTAAAAAGGCCGTATTGAGCTTGATGGTCACACCACAAATTACCCCTGATGATAAATTG
GTGCTCGATCTGCTGGTAACGCAAGATAAAGTAGGGGAAACAGTTGTTACCGGAACCGGAGAAGCGGTCGCTATCGATAC
TCAACGAATTGGCACGCAAGTTCTGGTCAATAATGGCGAGACTGTAGTCTTAGGGGGTATCTATCAGCATCAGGTGAATA
ATTCTGTCCGTAAAGTCCCTTTGTTGGGCGATATTCCAGGATTGGGCGTATTGTTCCGTCATAAGCTGCAAGAGATGGGC
AAGCGTGAACTGTTGATTTTCGTCACACCCAAAATTATCACCCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(260-326)

Secretin and TonB N terminus short domain (STN)

(186-234)

Bacterial type II and III secretion system protein (Secretin)

(415-573)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

60.946

99.304

0.605
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

60.946

99.304

0.605
  pilQ Vibrio campbellii strain DS40M4

60.753

97.043

0.59
  pilQ Legionella pneumophila strain Lp02

42.831

94.609

0.405
  pilQ Legionella pneumophila strain ERS1305867

42.831

94.609

0.405
  pilQ Pseudomonas aeruginosa PAK

41.281

97.739

0.403
  comQ Acinetobacter baylyi ADP1

40.564

98.609

0.4
  pilQ Acinetobacter baumannii D1279779

38.966

100

0.393
  pilQ Acinetobacter baumannii strain A118

38.966

100

0.393