Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   KVY09_RS06320 Genome accession   NZ_CP078159
Coordinates   1268304..1268624 (+) Length   106 a.a.
NCBI ID   WP_218449186.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain NY5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1263304..1273624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KVY09_RS06290 (KVY09_06290) - 1264090..1264293 (+) 204 WP_037550632.1 YqgQ family protein -
  KVY09_RS06295 (KVY09_06295) - 1264290..1265276 (+) 987 WP_011275665.1 ROK family glucokinase -
  KVY09_RS06300 (KVY09_06300) - 1265276..1265599 (+) 324 WP_011275666.1 MTH1187 family thiamine-binding protein -
  KVY09_RS06305 (KVY09_06305) - 1265601..1266227 (+) 627 WP_070442806.1 MBL fold metallo-hydrolase -
  KVY09_RS06310 (KVY09_06310) comGA 1266280..1267254 (+) 975 WP_070442811.1 competence type IV pilus ATPase ComGA Machinery gene
  KVY09_RS06315 (KVY09_06315) comGB 1267226..1268290 (+) 1065 WP_070442814.1 competence type IV pilus assembly protein ComGB -
  KVY09_RS06320 (KVY09_06320) comGC 1268304..1268624 (+) 321 WP_218449186.1 competence type IV pilus major pilin ComGC Machinery gene
  KVY09_RS06325 (KVY09_06325) - 1268689..1269057 (+) 369 WP_256323818.1 hypothetical protein -
  KVY09_RS13025 - 1269495..1269746 (+) 252 WP_240556425.1 hypothetical protein -
  KVY09_RS06335 (KVY09_06335) - 1269906..1270424 (+) 519 WP_070442826.1 shikimate kinase -
  KVY09_RS06340 (KVY09_06340) gcvT 1270614..1271705 (+) 1092 WP_070442828.1 glycine cleavage system aminomethyltransferase GcvT -
  KVY09_RS06345 (KVY09_06345) gcvPA 1271722..1273074 (+) 1353 WP_070442831.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11816.86 Da        Isoelectric Point: 8.5328

>NTDB_id=587418 KVY09_RS06320 WP_218449186.1 1268304..1268624(+) (comGC) [Staphylococcus haemolyticus strain NY5]
MKNHFENLKKLKAFTLIEMLLVLLIISVLLILIIPNIAKQTAHIQSTGCEAQVKMINSQIEAYTLKHNRTPSNINDLIND
GFIKEGQKQCRSGETITISNGEAIAN

Nucleotide


Download         Length: 321 bp        

>NTDB_id=587418 KVY09_RS06320 WP_218449186.1 1268304..1268624(+) (comGC) [Staphylococcus haemolyticus strain NY5]
ATGAAAAATCACTTTGAAAATTTAAAAAAGTTAAAAGCTTTTACTCTAATAGAAATGTTATTAGTATTACTAATTATCAG
CGTATTACTAATATTAATTATTCCAAACATTGCAAAACAAACAGCACATATCCAGTCCACAGGTTGTGAAGCTCAAGTCA
AAATGATAAATAGTCAAATAGAAGCATATACTTTAAAACATAATCGTACACCTTCTAATATAAATGATCTTATCAATGAT
GGCTTTATAAAAGAAGGACAAAAACAATGCAGATCGGGAGAAACTATTACAATATCTAATGGTGAGGCTATTGCGAACTA
G

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

84.314

96.226

0.811
  comGC Staphylococcus aureus N315

84.314

96.226

0.811
  comYC Streptococcus gordonii str. Challis substr. CH1

45.192

98.113

0.443
  comGC/cglC Streptococcus pneumoniae TIGR4

44.681

88.679

0.396
  comGC/cglC Streptococcus mitis NCTC 12261

49.383

76.415

0.377
  comGC/cglC Streptococcus mitis SK321

49.383

76.415

0.377
  comGC/cglC Streptococcus pneumoniae R6

48.148

76.415

0.368
  comGC/cglC Streptococcus pneumoniae Rx1

48.148

76.415

0.368
  comGC/cglC Streptococcus pneumoniae D39

48.148

76.415

0.368