Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   KU891_RS18015 Genome accession   NZ_CP078081
Coordinates   3540330..3541568 (-) Length   412 a.a.
NCBI ID   WP_000990729.1    Uniprot ID   A0A853XDQ5
Organism   Bacillus tropicus strain EMB20     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3535330..3546568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU891_RS17990 (KU891_17930) spoVS 3535417..3535677 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  KU891_RS17995 (KU891_17935) - 3535826..3536620 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  KU891_RS18000 (KU891_17940) rny 3536783..3538345 (-) 1563 WP_000204911.1 ribonuclease Y -
  KU891_RS18005 (KU891_17945) - 3538827..3539249 (-) 423 Protein_3495 DNA recombination/repair protein RecA -
  KU891_RS18010 (KU891_17950) recA 3539577..3540185 (-) 609 Protein_3496 recombinase RecA -
  KU891_RS18015 (KU891_17955) cinA 3540330..3541568 (-) 1239 WP_000990729.1 competence/damage-inducible protein CinA Machinery gene
  KU891_RS18020 (KU891_17960) pgsA 3541589..3542167 (-) 579 WP_001052965.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KU891_RS18025 (KU891_17965) - 3542231..3543142 (-) 912 WP_000137477.1 helix-turn-helix domain-containing protein -
  KU891_RS18030 (KU891_17970) - 3543164..3543949 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  KU891_RS18035 (KU891_17975) - 3544089..3544337 (-) 249 WP_000114448.1 DUF3243 domain-containing protein -
  KU891_RS18040 (KU891_17980) - 3544413..3545126 (-) 714 WP_000759589.1 SDR family oxidoreductase -
  KU891_RS18045 (KU891_17985) - 3545230..3546516 (-) 1287 WP_000411945.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45455.79 Da        Isoelectric Point: 5.4733

>NTDB_id=586605 KU891_RS18015 WP_000990729.1 3540330..3541568(-) (cinA) [Bacillus tropicus strain EMB20]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
ISSSLGEELVYDENALALISDYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMRPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLASDGEVTLRLTAKHQNAHEAEKLIQHMED
LILERVGEFFYGYDQEFLHYKAIELLKKKGLTLACAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPKEV
LSTDGAVSKECARYLAENVKELLKADIGISFTGVAGPDASEHKEPGTVFVGLAMKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=586605 KU891_RS18015 WP_000990729.1 3540330..3541568(-) (cinA) [Bacillus tropicus strain EMB20]
ATGAATGCTGAAATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAACGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGCATTAATGTGTACTACCATACTGTAGTTGGAGATAATAACAAACGATTACAGCAGGCGATTG
AAGTTGCAGAAGAACGTGCGGATATGCTTATTTTTACAGGTGGATTAGGCCCGACAAAAGATGATTTGACGAAGGAAACA
ATTTCGTCTAGCTTAGGGGAAGAGCTTGTATATGACGAAAATGCATTAGCATTAATAAGCGATTATTTTAAGCGTACAGG
TCGTGAGTTCACTGAAAATAATAAAAAGCAGGCACTCGTTTTAAATGGAGCAACTGTATTTGCAAATGATCACGGTATGG
CACCTGGTATGGGTTTAAATAAGAACGGAAAAGTTTATATCTTATTACCCGGACCGCCGAAAGAAATGAGGCCAATGTAT
GTAAGTTATGTAGAGCCTTTTTTACGTAACTTTACCACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTCTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAACCCGACAATCGCCCCGCTTGCGAGTG
ATGGAGAAGTGACATTACGTTTAACTGCGAAGCATCAAAATGCTCATGAAGCGGAGAAACTCATTCAGCATATGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTGCACTATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCATGTGCAGAAAGTTTAACAGGTGGTCTCTTCGGTAATCAAGTAACAGAAAGTGCTGGTG
TGTCTTCCGTATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACATGTACCTAAGGAAGTG
TTGTCTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAAGAATTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGACCAGATGCTTCAGAACATAAAGAGCCGGGAACAGTATTTGTTGGATTGGCGA
TGAAAGATGAACCAACTGTAGTCTTTCCTCTAAATTTAAGCGGAAGTCGTCAACAAATTAGGGAACGCTCAGCAAAATAT
GGATTTTATCATTTGTATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A853XDQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.223

100

0.592
  cinA Streptococcus mitis SK321

47.017

100

0.478
  cinA Streptococcus pneumoniae TIGR4

46.778

100

0.476
  cinA Streptococcus pneumoniae Rx1

46.301

100

0.471
  cinA Streptococcus pneumoniae R6

46.301

100

0.471
  cinA Streptococcus pneumoniae D39

46.062

100

0.468
  cinA Streptococcus mitis NCTC 12261

46.062

100

0.468
  cinA Streptococcus mutans UA159

45.074

98.544

0.444
  cinA Streptococcus suis isolate S10

41.005

91.748

0.376