Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   EGT68_RS01455 Genome accession   NZ_CP078042
Coordinates   304467..306602 (+) Length   711 a.a.
NCBI ID   WP_164546283.1    Uniprot ID   -
Organism   Acinetobacter junii strain AJ_068     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 299467..311602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT68_RS01435 (EGT68_001435) pilM 301439..302497 (+) 1059 WP_004909635.1 pilus assembly protein PilM Machinery gene
  EGT68_RS01440 (EGT68_001440) pilN 302497..303141 (+) 645 WP_004909633.1 PilN domain-containing protein Machinery gene
  EGT68_RS01445 (EGT68_001445) pilO 303138..303878 (+) 741 WP_004964600.1 type 4a pilus biogenesis protein PilO Machinery gene
  EGT68_RS01450 (EGT68_001450) pilP 303878..304405 (+) 528 WP_004909624.1 pilus assembly protein PilP Machinery gene
  EGT68_RS01455 (EGT68_001455) pilQ 304467..306602 (+) 2136 WP_164546283.1 type IV pilus secretin PilQ family protein Machinery gene
  EGT68_RS01460 (EGT68_001460) aroK 306622..307182 (+) 561 WP_004909618.1 shikimate kinase AroK -
  EGT68_RS01465 (EGT68_001465) aroB 307203..308285 (+) 1083 WP_125272580.1 3-dehydroquinate synthase -
  EGT68_RS01470 (EGT68_001470) - 308302..309180 (+) 879 WP_125272579.1 hypothetical protein -

Sequence

Protein


Download         Length: 711 a.a.        Molecular weight: 77099.32 Da        Isoelectric Point: 5.5093

>NTDB_id=586460 EGT68_RS01455 WP_164546283.1 304467..306602(+) (pilQ) [Acinetobacter junii strain AJ_068]
MNHAFRQFSMAAVAIAISQVASAQVGITNIVPMNLGDQGTEIRVMFNGLPPQPQAYQLEQPARLILDFDKAQQNLKQTSI
PVSTNEASSVNVAADDQRARLIVNLKDSGAFTTRVEGNTFVLKINSAKPTLISNPTVATRQVQQGVSNIGFQRGNQGEGL
VVIDLLGGNTPVDVQQQGSKIVVRTIGNKIPTHLARRLNTNDFATPVASIDAYNDKGNGVITIQSAGSYEYMAYQAENKL
TISLKRPEDKSPNKAKPQSYTGNKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIVLKTKN
LDKRRNGNVIWIAPVTELIKAEEDEAKAIAQSVKLAPLQTEYIQLSYAKAADIEKLITQGKNSSANSNQGSSGSSLGDSV
GSLLSPRGTVSIDPRTNTLIINDTSQKIDQIRKMIDLLDVSVKQVMIEARIVRASTDFTKEMGVKWGILSQGISSNNDLL
VGGSDTTLWNLRDPEKDEDTGGWKYDIERPDNLNVNLGAVTPGASRIAFGLISLSDFMLDLELSAVQADGYGEVISTPKV
LTADKQAAKIESGTQIPYSSSTGAGANAVPKTEFIDATLSLDVTPSITPEGKVMMKLNITKDSPGNPTPTGQLTINKNTI
DTNVVVDNGETVVLGGIFEQENINSQTKVPFLGDLPYVGKLFRRESKQDNKRELLIFVTPRIVNDTLTRNH

Nucleotide


Download         Length: 2136 bp        

>NTDB_id=586460 EGT68_RS01455 WP_164546283.1 304467..306602(+) (pilQ) [Acinetobacter junii strain AJ_068]
ATGAATCATGCATTCCGTCAATTTTCTATGGCTGCGGTTGCAATTGCTATTTCGCAAGTAGCTTCGGCACAGGTGGGTAT
TACAAATATTGTGCCGATGAACTTGGGTGATCAGGGTACTGAAATCAGAGTCATGTTTAATGGTTTGCCTCCTCAACCAC
AGGCCTATCAACTTGAGCAGCCTGCTCGTTTAATTTTAGATTTTGATAAGGCTCAGCAGAACTTAAAGCAAACGTCTATT
CCTGTTTCAACCAATGAGGCAAGTTCCGTCAATGTGGCTGCAGATGATCAGCGTGCTCGTTTAATCGTGAATTTAAAAGA
CTCGGGTGCTTTCACAACCCGTGTTGAAGGTAATACTTTTGTTTTAAAAATAAATTCTGCAAAACCAACATTAATCAGTA
ATCCTACGGTTGCTACTCGACAAGTTCAACAAGGTGTTTCCAATATTGGTTTTCAAAGAGGAAATCAAGGTGAGGGGTTA
GTTGTTATTGATTTATTGGGAGGTAATACACCAGTAGATGTACAGCAACAGGGGAGTAAAATTGTTGTTCGCACTATTGG
AAATAAAATTCCAACACACTTAGCACGTCGTTTAAACACTAATGATTTTGCGACCCCAGTAGCAAGTATTGATGCTTATA
ATGATAAAGGAAATGGGGTTATTACTATTCAATCTGCGGGTAGCTATGAGTACATGGCTTATCAGGCAGAAAACAAACTT
ACAATTAGTTTAAAAAGACCAGAAGATAAGTCACCGAATAAAGCTAAACCACAAAGCTATACTGGAAATAAAATTTCATT
AGATTTCCAAGATATCGAGGTTCGCCGTGTTTTGCAGTTGTTAGCAGACTTTACCGGAATTAATATGGTTGCTGCTGATA
CTGTACAGGGAAATATTACACTACGTCTTAAAGACGTTCCTTGGGATCAGGCTCTTGATATCGTTTTAAAAACAAAAAAC
TTGGATAAGCGTCGTAATGGAAATGTAATTTGGATTGCACCAGTTACTGAGCTAATCAAAGCGGAAGAGGATGAAGCGAA
AGCAATCGCTCAAAGTGTGAAACTTGCACCTTTGCAAACAGAGTATATTCAATTGAGTTATGCGAAAGCGGCAGATATTG
AAAAACTAATTACTCAGGGTAAAAATAGCTCAGCTAATAGTAATCAGGGAAGTAGTGGATCCTCTTTAGGTGATAGCGTA
GGTAGTTTATTGAGCCCACGCGGAACGGTTTCGATTGACCCACGTACAAATACTTTGATTATAAATGATACATCTCAAAA
GATTGATCAGATCCGTAAGATGATCGATTTGCTTGATGTATCGGTTAAACAAGTGATGATTGAAGCACGTATTGTGCGTG
CAAGTACAGACTTTACCAAAGAGATGGGGGTAAAGTGGGGGATATTGTCGCAAGGTATATCTTCAAACAATGATCTTCTA
GTTGGTGGTAGTGATACAACTTTATGGAATCTCCGTGATCCAGAAAAAGATGAGGATACAGGTGGTTGGAAATATGATAT
TGAACGTCCAGATAACCTAAATGTAAATTTAGGTGCTGTAACTCCTGGGGCAAGTCGTATTGCTTTTGGTTTGATTAGTC
TTTCAGATTTTATGTTGGACTTAGAGTTGTCTGCAGTTCAAGCTGATGGTTACGGTGAAGTGATTTCGACTCCGAAAGTA
CTGACTGCTGATAAGCAAGCTGCAAAAATTGAATCAGGGACTCAGATTCCTTACTCATCTTCTACTGGGGCGGGAGCGAA
TGCAGTTCCTAAAACAGAGTTTATTGATGCGACATTGAGTTTGGATGTAACTCCGAGTATCACACCTGAAGGTAAAGTGA
TGATGAAATTAAACATCACCAAAGACTCACCTGGAAATCCAACACCTACAGGGCAGTTGACGATTAATAAAAACACAATT
GATACCAATGTTGTGGTTGATAATGGTGAAACTGTTGTTCTTGGTGGAATCTTCGAGCAAGAAAATATTAATTCTCAGAC
CAAAGTTCCATTCTTGGGTGATTTACCTTATGTTGGGAAATTATTCCGCAGAGAGTCTAAACAAGACAATAAACGCGAGT
TGCTTATTTTTGTTACGCCGAGAATTGTTAATGACACTTTGACAAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(292-334)

Bacterial type II and III secretion system protein (Secretin)

(545-703)

Bacterial type II/III secretion system short domain (Secretin_N)

(361-444)

AMIN domain (AMIN)

(37-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

75.691

100

0.771
  pilQ Acinetobacter baumannii strain A118

75.691

100

0.771
  comQ Acinetobacter baylyi ADP1

73.574

100

0.744
  pilQ Pseudomonas aeruginosa PAK

41.227

98.594

0.406
  pilQ Legionella pneumophila strain ERS1305867

39.259

94.937

0.373
  pilQ Legionella pneumophila strain Lp02

39.079

94.655

0.37