Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   EGT68_RS01440 Genome accession   NZ_CP078042
Coordinates   302497..303141 (+) Length   214 a.a.
NCBI ID   WP_004909633.1    Uniprot ID   S7WRY4
Organism   Acinetobacter junii strain AJ_068     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 297497..308141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT68_RS01425 (EGT68_001425) - 297864..298682 (+) 819 WP_004964610.1 putative RNA methyltransferase -
  EGT68_RS01430 (EGT68_001430) ponA 298697..301276 (-) 2580 WP_125272582.1 penicillin-binding protein PBP1a -
  EGT68_RS01435 (EGT68_001435) pilM 301439..302497 (+) 1059 WP_004909635.1 pilus assembly protein PilM Machinery gene
  EGT68_RS01440 (EGT68_001440) pilN 302497..303141 (+) 645 WP_004909633.1 PilN domain-containing protein Machinery gene
  EGT68_RS01445 (EGT68_001445) pilO 303138..303878 (+) 741 WP_004964600.1 type 4a pilus biogenesis protein PilO Machinery gene
  EGT68_RS01450 (EGT68_001450) pilP 303878..304405 (+) 528 WP_004909624.1 pilus assembly protein PilP Machinery gene
  EGT68_RS01455 (EGT68_001455) pilQ 304467..306602 (+) 2136 WP_164546283.1 type IV pilus secretin PilQ family protein Machinery gene
  EGT68_RS01460 (EGT68_001460) aroK 306622..307182 (+) 561 WP_004909618.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23774.17 Da        Isoelectric Point: 5.1372

>NTDB_id=586457 EGT68_RS01440 WP_004909633.1 302497..303141(+) (pilN) [Acinetobacter junii strain AJ_068]
MAKINLLPWRDELREQRKKQFIAYCVGVAALGVASVLAGWGYLDYKLNDQEQANQLIVSTNQNLDAQLKSLDGLQERRNA
IIERMKLIQGLQGQRPVAVRLIDELVRVTPPTMYLTKFTRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
AEEKKDKTVSSLIPRIEENYGSFVVTVDLGEIGTTVEADPLAETVASGTVGAAQ

Nucleotide


Download         Length: 645 bp        

>NTDB_id=586457 EGT68_RS01440 WP_004909633.1 302497..303141(+) (pilN) [Acinetobacter junii strain AJ_068]
ATGGCAAAGATTAACTTACTCCCTTGGCGTGATGAGCTAAGAGAACAACGAAAGAAACAATTTATTGCATATTGTGTAGG
GGTTGCTGCATTAGGTGTGGCATCGGTTTTGGCAGGATGGGGTTATCTTGATTACAAATTAAATGATCAAGAACAAGCGA
ACCAACTGATTGTGAGCACAAATCAAAATCTTGATGCTCAATTAAAATCCTTAGATGGCTTGCAAGAGCGACGTAATGCA
ATTATTGAACGGATGAAACTCATTCAAGGTTTGCAAGGTCAAAGACCTGTCGCTGTACGTTTAATCGATGAATTGGTGCG
AGTTACTCCGCCTACCATGTATTTGACTAAATTTACACGTACAGGCGATAAGTTCACGATTGAAGGTAAAGCTGAAAGTC
CAAACACAGTAGCTGAATTACTGAGAAATCTTGAAGCATCACCTTGGTATCGCAACGCTTTTATGAATTCCTTTTTAGCG
GCTGAAGAGAAAAAAGACAAAACTGTCAGCTCGCTTATACCTCGTATTGAAGAAAACTATGGAAGTTTTGTTGTAACTGT
TGATCTTGGTGAAATAGGCACAACAGTTGAAGCTGACCCATTAGCAGAAACGGTCGCATCAGGAACAGTGGGGGCAGCAC
AATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7WRY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

76.636

100

0.766
  comN Acinetobacter baylyi ADP1

73.333

98.131

0.72