Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   EGT68_RS01445 Genome accession   NZ_CP078042
Coordinates   303138..303878 (+) Length   246 a.a.
NCBI ID   WP_004964600.1    Uniprot ID   -
Organism   Acinetobacter junii strain AJ_068     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 298138..308878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT68_RS01430 (EGT68_001430) ponA 298697..301276 (-) 2580 WP_125272582.1 penicillin-binding protein PBP1a -
  EGT68_RS01435 (EGT68_001435) pilM 301439..302497 (+) 1059 WP_004909635.1 pilus assembly protein PilM Machinery gene
  EGT68_RS01440 (EGT68_001440) pilN 302497..303141 (+) 645 WP_004909633.1 PilN domain-containing protein Machinery gene
  EGT68_RS01445 (EGT68_001445) pilO 303138..303878 (+) 741 WP_004964600.1 type 4a pilus biogenesis protein PilO Machinery gene
  EGT68_RS01450 (EGT68_001450) pilP 303878..304405 (+) 528 WP_004909624.1 pilus assembly protein PilP Machinery gene
  EGT68_RS01455 (EGT68_001455) pilQ 304467..306602 (+) 2136 WP_164546283.1 type IV pilus secretin PilQ family protein Machinery gene
  EGT68_RS01460 (EGT68_001460) aroK 306622..307182 (+) 561 WP_004909618.1 shikimate kinase AroK -
  EGT68_RS01465 (EGT68_001465) aroB 307203..308285 (+) 1083 WP_125272580.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27803.38 Da        Isoelectric Point: 4.6374

>NTDB_id=586458 EGT68_RS01445 WP_004964600.1 303138..303878(+) (pilO) [Acinetobacter junii strain AJ_068]
MSQEELNELNQDVAVKKKKMTVEQFFQQFNTLDMNNYGSWPLSVKVTCWIFVFLAVLALGYFVVIKSQLERIANEEAKEQ
SLLNEFREKDSKLRNLQRYQAQLQEMEANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLENEVKQEFFIEQPI
SIEATGDYHAFGAFATGIAALPRIVTLHDFTVEASEDKTKKSDIPVVNYSVKAKTYRYVGADDAANTEVGAAVPPQNNPP
SQGGTN

Nucleotide


Download         Length: 741 bp        

>NTDB_id=586458 EGT68_RS01445 WP_004964600.1 303138..303878(+) (pilO) [Acinetobacter junii strain AJ_068]
ATGAGTCAAGAAGAATTAAATGAACTCAATCAAGATGTTGCTGTAAAGAAAAAGAAAATGACAGTAGAGCAATTCTTTCA
GCAATTTAATACGCTTGATATGAATAATTACGGTAGCTGGCCGCTATCTGTAAAAGTGACATGTTGGATTTTTGTTTTTT
TAGCTGTTTTAGCACTTGGTTACTTTGTTGTTATTAAATCTCAGCTTGAGCGTATTGCTAATGAAGAGGCTAAAGAGCAA
AGTTTATTGAATGAATTTAGAGAAAAAGACTCTAAACTGCGTAATTTGCAGCGTTACCAAGCTCAGTTACAAGAAATGGA
AGCTAATTTTAATCAGCAACTAGAACAATTGCCGAAAGAAACTGAGATTCCAAGTTTGGTTGAAGATATTAACTTGACTG
GTGTGAATTCGGGGTTGAAGTTTAAGAATATTCGCTTAGAAAATGAGGTTAAGCAAGAATTCTTTATTGAACAACCGATT
AGTATTGAAGCAACTGGCGATTATCATGCATTTGGAGCATTTGCTACAGGTATTGCTGCACTGCCTCGAATTGTAACTTT
ACATGATTTCACGGTTGAAGCTTCAGAAGATAAGACGAAGAAGTCAGATATTCCTGTTGTGAATTATTCTGTTAAAGCCA
AAACCTACCGTTATGTGGGGGCTGATGATGCAGCAAACACTGAGGTTGGAGCGGCGGTACCTCCTCAGAATAATCCACCT
AGTCAAGGAGGAACTAACTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(72-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

72.47

100

0.728
  comO Acinetobacter baylyi ADP1

73.043

93.496

0.683