Detailed information NTG0586417

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: EGK58_RS07250
• Genome accession: NZ_CP078027
• Coordinates: 1509311..1510507 (+)
• Length: 398 a.a.
• NCBI ID: WP_125278619.1
• Uniprot ID: -
• Organism: Acinetobacter variabilis strain AV_175
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1504311..1515507

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EGK58_RS07235 (EGK58_007235)	-	1505358..1505888 (+)	531	WP_125278622.1	hypothetical protein	-
EGK58_RS07240 (EGK58_007240)	-	1506427..1507476 (+)	1050	WP_125278621.1	3-deoxy-7-phosphoheptulonate synthase	-
EGK58_RS07245 (EGK58_007245)	pilU	1507730..1508908 (+)	1179	WP_125278620.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
EGK58_RS07250 (EGK58_007250)	pilU	1509311..1510507 (+)	1197	WP_125278619.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
EGK58_RS07255 (EGK58_007255)	-	1510582..1511757 (-)	1176	WP_125278618.1	MFS transporter	-
EGK58_RS07260 (EGK58_007260)	gcvH	1512010..1512384 (-)	375	WP_104426083.1	glycine cleavage system protein GcvH	-
EGK58_RS07265 (EGK58_007265)	-	1512467..1513495 (-)	1029	WP_104426084.1	AraC family transcriptional regulator	-

Sequence

Protein

• Length: 398 a.a.
• Molecular weight: 44958.50 Da
• Isoelectric Point: 6.5072

>NTDB_id=586417 EGK58_RS07250 WP_125278619.1 1509311..1510507(+) (pilU) [Acinetobacter variabilis strain AV_175]
MFTAELLDEAKKFMHHMLTKVVEYGGSDLFITADFPPSIKHQGLMKPFGQQILTAEKTKLFAYSLMNDKQRQEFEAELEC
NFAITVPGVSRFRVNVFVQQLQVGMVIRTITAEIPNFQKLKLPESLKHVIMEKRGLVLVVGGTGSGKSTSLAAMIDYRNE
NSAGHIITVEDPVEYVHKHKKSMITHREVGVDCHSWHNALKNTLRQAPDVILIGEIRDTETMEHAIAFAETGHLCLGTLH
SNNANQTLDRIINFFPEERRNQLLMDLSSNMKAIISQRLIRTQDGKGRRAAIEIMLNTPLISDLILKGEFHELKAIMGKS
RELGMQTFDQALFDLYNEGAISYEEALRNADSTNELRLQIKLKSNRQDNPAAGEATQFTMMQEPKAEEKEQENTSASE

Nucleotide

• Length: 1197 bp

>NTDB_id=586417 EGK58_RS07250 WP_125278619.1 1509311..1510507(+) (pilU) [Acinetobacter variabilis strain AV_175]
ATGTTCACGGCAGAACTGTTGGACGAAGCAAAAAAATTCATGCATCACATGCTGACCAAAGTAGTGGAATATGGGGGCTC
AGACTTATTTATTACCGCAGATTTTCCACCGAGTATTAAACATCAGGGCTTAATGAAGCCCTTTGGACAACAAATTCTTA
CTGCTGAAAAAACCAAACTGTTTGCTTATAGCTTGATGAATGATAAACAGCGTCAAGAGTTTGAAGCTGAACTAGAATGT
AACTTCGCGATTACTGTACCGGGTGTATCGCGCTTCCGGGTAAATGTTTTTGTACAACAGCTTCAGGTCGGGATGGTAAT
CCGGACCATTACGGCAGAAATTCCAAATTTCCAGAAACTGAAATTACCAGAATCATTGAAACACGTGATTATGGAAAAAC
GCGGTCTGGTACTGGTTGTAGGAGGAACGGGTTCAGGTAAATCGACCTCTCTGGCAGCGATGATTGACTACCGCAATGAA
AATTCGGCGGGGCATATCATTACCGTGGAAGATCCGGTGGAATATGTACATAAACACAAGAAATCCATGATTACTCACCG
TGAAGTTGGAGTCGATTGCCATTCCTGGCACAATGCGCTGAAAAATACCTTGCGTCAGGCCCCCGATGTAATTCTGATCG
GTGAGATTCGGGATACCGAAACCATGGAACACGCAATTGCCTTTGCTGAAACCGGACATTTATGTCTGGGTACACTGCAT
TCCAATAATGCTAACCAGACTTTGGACCGGATTATTAACTTCTTCCCGGAAGAACGCCGTAATCAGTTATTAATGGATTT
ATCTTCGAATATGAAGGCGATTATTTCCCAGCGTCTGATTCGTACTCAGGATGGAAAAGGGCGTCGGGCTGCAATTGAAA
TCATGTTAAATACACCTTTGATTTCTGATCTGATTCTAAAAGGTGAGTTTCATGAGCTGAAAGCCATTATGGGCAAATCT
CGTGAACTGGGCATGCAGACTTTCGATCAGGCCTTATTTGACCTGTATAACGAGGGTGCGATTTCTTATGAGGAAGCATT
GCGTAATGCTGATTCGACTAATGAATTACGTTTACAGATCAAGCTGAAAAGCAACCGCCAAGATAATCCTGCTGCTGGAG
AAGCAACACAATTCACGATGATGCAAGAACCGAAAGCTGAAGAAAAAGAACAGGAAAATACTTCAGCATCTGAATAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (117-282)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	60.92	87.437	0.533
pilU	Acinetobacter baylyi ADP1	55.908	87.186	0.487
pilU	Vibrio cholerae strain A1552	51.781	91.709	0.475
pilT	Pseudomonas aeruginosa PAK	44.172	81.91	0.362
pilT	Acinetobacter nosocomialis M2	43.636	82.915	0.362
pilT	Acinetobacter baumannii D1279779	43.636	82.915	0.362
pilT	Acinetobacter baumannii strain A118	43.636	82.915	0.362