Detailed information NTG0586416

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: EGK58_RS07245
• Genome accession: NZ_CP078027
• Coordinates: 1507730..1508908 (+)
• Length: 392 a.a.
• NCBI ID: WP_125278620.1
• Uniprot ID: -
• Organism: Acinetobacter variabilis strain AV_175
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1502730..1513908

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EGK58_RS07230 (EGK58_007230)	-	1504036..1505148 (+)	1113	WP_034704162.1	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	-
EGK58_RS07235 (EGK58_007235)	-	1505358..1505888 (+)	531	WP_125278622.1	hypothetical protein	-
EGK58_RS07240 (EGK58_007240)	-	1506427..1507476 (+)	1050	WP_125278621.1	3-deoxy-7-phosphoheptulonate synthase	-
EGK58_RS07245 (EGK58_007245)	pilU	1507730..1508908 (+)	1179	WP_125278620.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
EGK58_RS07250 (EGK58_007250)	pilU	1509311..1510507 (+)	1197	WP_125278619.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
EGK58_RS07255 (EGK58_007255)	-	1510582..1511757 (-)	1176	WP_125278618.1	MFS transporter	-
EGK58_RS07260 (EGK58_007260)	gcvH	1512010..1512384 (-)	375	WP_104426083.1	glycine cleavage system protein GcvH	-
EGK58_RS07265 (EGK58_007265)	-	1512467..1513495 (-)	1029	WP_104426084.1	AraC family transcriptional regulator	-

Sequence

Protein

• Length: 392 a.a.
• Molecular weight: 44328.73 Da
• Isoelectric Point: 6.4331

>NTDB_id=586416 EGK58_RS07245 WP_125278620.1 1507730..1508908(+) (pilU) [Acinetobacter variabilis strain AV_175]
MYTTELLDEARKFMHHILTKVVEYGGSDLFITADFPPSIKQQGLMKPFGQQKLTADKTRLFAYALMNERQIQEFESVMEC
NFSISIPSVSRFRVNVFQQQHNVGMVIRVITTDIPSFEQLGLPASLQQVIMQNRGLVLVVGATGVGKSTTLAAMIDYRNT
HTEGHIITIEDPVEYVYQHKKSMITQREIGVDCVSWHNALINTMRQAPDVIVIGEIRDTDSMEHAIAFAESGHLCLATLH
SNNADQALDRIINFFPEERRNQLLLDLSANIKAVISQRLIRTEDGKGRRAAVEILQNTPLVSDLIRKGEFHELKTIMARS
RELGMQTFDQALFDLYNQGIISYEEALRNADSSNELRLQIKLKSSRINPVLQAENAQISLLEQSRSRALSPD

Nucleotide

• Length: 1179 bp

>NTDB_id=586416 EGK58_RS07245 WP_125278620.1 1507730..1508908(+) (pilU) [Acinetobacter variabilis strain AV_175]
ATGTATACAACTGAATTGCTCGATGAAGCACGTAAATTTATGCACCATATCCTAACCAAAGTCGTTGAATATGGTGGTTC
CGATCTTTTTATTACAGCTGATTTCCCGCCCAGTATCAAACAGCAAGGTTTAATGAAACCGTTTGGCCAGCAGAAACTCA
CAGCCGATAAGACCCGTTTGTTTGCTTATGCCTTGATGAATGAGCGACAGATTCAGGAATTTGAATCGGTGATGGAATGC
AATTTTAGTATTAGCATCCCGAGCGTGTCGCGTTTCCGGGTTAATGTCTTCCAGCAACAGCACAATGTGGGCATGGTGAT
TCGGGTCATTACGACAGATATTCCAAGCTTTGAGCAACTAGGCTTACCGGCTTCATTGCAACAGGTCATCATGCAGAACC
GTGGTCTGGTGTTGGTAGTCGGCGCAACGGGTGTCGGAAAATCGACTACATTAGCAGCTATGATTGATTACCGTAATACG
CATACTGAAGGGCATATTATTACGATCGAAGATCCGGTGGAATATGTCTATCAGCATAAAAAATCGATGATTACCCAGCG
GGAAATTGGTGTGGATTGTGTTTCCTGGCACAATGCACTGATTAATACCATGCGGCAGGCACCTGACGTCATCGTGATTG
GTGAAATCCGCGATACAGACAGTATGGAACATGCAATTGCCTTTGCTGAATCCGGCCATTTATGCCTTGCCACACTTCAT
TCCAATAATGCCGATCAGGCCTTGGACCGGATTATTAACTTCTTCCCAGAAGAACGCCGTAATCAGCTACTGCTAGATTT
ATCAGCTAATATCAAAGCCGTGATTTCTCAGCGGCTAATTCGCACTGAAGATGGTAAAGGTCGTCGGGCTGCGGTAGAAA
TTCTGCAAAATACCCCTTTAGTTTCTGACCTGATTCGTAAAGGTGAATTCCATGAACTTAAAACGATTATGGCTCGTTCG
CGGGAACTGGGCATGCAAACCTTTGATCAGGCATTATTTGATTTATATAACCAAGGCATTATTTCTTATGAAGAAGCCTT
GCGTAATGCAGACTCCAGCAATGAATTACGTTTGCAAATCAAATTAAAGAGTAGTCGTATCAATCCTGTTTTACAGGCAG
AAAATGCCCAGATTTCACTTCTGGAACAGTCCAGATCGCGTGCACTTTCACCTGACTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (64-282)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	59.195	88.776	0.526
pilU	Acinetobacter baylyi ADP1	54.366	90.561	0.492
pilU	Vibrio cholerae strain A1552	51.429	89.286	0.459
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.647	86.735	0.37