Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   TL13_RS05660 Genome accession   NC_021213
Coordinates   1147826..1148488 (-) Length   220 a.a.
NCBI ID   WP_015646962.1    Uniprot ID   -
Organism   Streptococcus suis TL13     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1142826..1153488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TL13_RS05645 (TL13_1121) - 1143714..1144541 (-) 828 WP_015646959.1 hypothetical protein -
  TL13_RS05650 (TL13_1122) - 1144635..1145291 (-) 657 WP_015646960.1 CBS domain-containing protein -
  TL13_RS10890 - 1145474..1145596 (-) 123 Protein_1066 IS982 family transposase -
  TL13_RS05655 (TL13_1123) comEC/celB 1145605..1147842 (-) 2238 WP_041179393.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  TL13_RS05660 (TL13_1124) comEA/celA/cilE 1147826..1148488 (-) 663 WP_015646962.1 helix-hairpin-helix domain-containing protein Machinery gene
  TL13_RS05665 (TL13_1125) - 1148555..1149301 (-) 747 WP_014735985.1 lysophospholipid acyltransferase family protein -
  TL13_RS05670 (TL13_1126) - 1149448..1150893 (+) 1446 WP_015646963.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  TL13_RS05675 (TL13_1127) - 1151045..1151830 (+) 786 WP_014636900.1 ABC transporter ATP-binding protein -
  TL13_RS05680 (TL13_1128) - 1151843..1152772 (+) 930 WP_015646964.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23220.93 Da        Isoelectric Point: 4.2322

>NTDB_id=58636 TL13_RS05660 WP_015646962.1 1147826..1148488(-) (comEA/celA/cilE) [Streptococcus suis TL13]
MDTIKTYIEMLKEYKWQIALPAVAGLLMGTFLIFSQPAKSDQTGLTDFPQTAQTSSSSDLGEETSTEASEEPSQLVVDVK
GAVVKPGLYTLEAGARVNDAVKAAGGLTSQANPKSINLAQKLSDEAVVYVASKDENISVVTSTATSSAMSQEEKNTSLVN
LNTATEADLQTISGIGAKRAADIIAYREANGGFKSVDDLNNVSGIGDKTMESIRPYVTVD

Nucleotide


Download         Length: 663 bp        

>NTDB_id=58636 TL13_RS05660 WP_015646962.1 1147826..1148488(-) (comEA/celA/cilE) [Streptococcus suis TL13]
ATGGATACGATTAAAACTTATATAGAAATGCTTAAAGAATACAAGTGGCAAATTGCTCTGCCAGCAGTGGCTGGCTTGCT
AATGGGGACGTTCTTAATCTTCAGTCAACCAGCCAAGTCTGACCAGACAGGACTGACAGATTTTCCGCAGACCGCACAAA
CTTCTAGCAGCTCTGACTTGGGCGAGGAAACCAGTACAGAAGCAAGTGAAGAGCCCAGCCAGCTGGTCGTTGATGTCAAA
GGAGCGGTAGTAAAACCAGGACTCTACACTTTAGAAGCTGGTGCGCGTGTTAATGATGCAGTTAAAGCAGCTGGCGGCTT
GACCAGTCAGGCAAACCCAAAGTCTATCAATCTGGCTCAGAAGCTCAGCGATGAGGCGGTGGTCTATGTGGCCAGCAAGG
ACGAAAATATCTCGGTGGTGACCAGCACGGCTACCAGCTCTGCTATGTCCCAAGAAGAAAAAAACACCAGTCTAGTCAAT
CTGAATACGGCGACCGAGGCTGACTTGCAGACTATTTCTGGTATTGGTGCCAAGCGAGCGGCGGACATTATCGCCTATCG
TGAGGCCAATGGCGGCTTCAAATCAGTGGATGACCTCAACAATGTTTCGGGCATTGGCGACAAGACCATGGAAAGCATTC
GACCTTATGTCACGGTCGATTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(155-218)

SLBB domain (SLBB)

(76-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

50

99.091

0.495
  comEA/celA/cilE Streptococcus pneumoniae Rx1

48.43

100

0.491
  comEA/celA/cilE Streptococcus pneumoniae D39

48.43

100

0.491
  comEA/celA/cilE Streptococcus pneumoniae R6

48.43

100

0.491
  comEA/celA/cilE Streptococcus mitis NCTC 12261

47.534

100

0.482
  comEA/celA/cilE Streptococcus mitis SK321

45.946

100

0.464
  comEA Streptococcus thermophilus LMD-9

60.759

71.818

0.436
  comEA Lactococcus lactis subsp. cremoris KW2

38.053

100

0.391

Multiple sequence alignment