Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   EP180_RS14785 Genome accession   NZ_AP018385
Coordinates   2104271..2104756 (-) Length   161 a.a.
NCBI ID   WP_125121586.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FC498     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2099271..2109756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EP180_RS14775 - 2099866..2100371 (-) 506 Protein_2122 pilin -
  EP180_RS14260 - 2101428..2101769 (-) 342 Protein_2123 pilin -
  EP180_RS14780 - 2101809..2102195 (-) 387 Protein_2124 pilin -
  EP180_RS12485 (NgFC498_02164) lpxC 2102337..2103260 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  EP180_RS13910 (NgFC498_02165) - 2103754..2104139 (-) 386 Protein_2126 pilin -
  EP180_RS14785 (NgFC498_02166) pilE 2104271..2104756 (-) 486 WP_125121586.1 pilin Machinery gene
  EP180_RS12510 - 2104813..2105160 (-) 348 Protein_2128 pilin -
  EP180_RS14370 - 2105213..2105603 (-) 391 Protein_2129 pilin -
  EP180_RS12525 (NgFC498_02168) - 2105735..2106174 (-) 440 Protein_2130 pilin -
  EP180_RS14975 (NgFC498_02169) - 2106700..2107428 (-) 729 WP_353114220.1 pilin -
  EP180_RS12550 (NgFC498_02170) - 2107451..2107669 (-) 219 Protein_2132 pilin -
  EP180_RS14290 - 2107999..2108190 (+) 192 WP_014580443.1 hypothetical protein -
  EP180_RS12565 (NgFC498_02171) - 2108254..2108943 (-) 690 WP_003696506.1 SprT family zinc-dependent metalloprotease -
  EP180_RS12570 (NgFC498_02172) - 2108940..2109683 (-) 744 WP_003687014.1 lysophospholipid acyltransferase family protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17314.41 Da        Isoelectric Point: 9.7934

>NTDB_id=58489 EP180_RS14785 WP_125121586.1 2104271..2104756(-) (pilE) [Neisseria gonorrhoeae strain FC498]
MASSPTDIKGKYVKSVTVAKGVVTAQMASTGVNKEIQGKKLSLWGRRENGSVKWFCGQPVTRTDKANDDVTDDATATMNS
SNVNKEIQGKKLSLWARRQDGSVKWFCGQPVKRDNANADTVTADATGNDGKIDTKHLPSTCRDAASAGCIETPPTAFYKN
T

Nucleotide


Download         Length: 486 bp        

>NTDB_id=58489 EP180_RS14785 WP_125121586.1 2104271..2104756(-) (pilE) [Neisseria gonorrhoeae strain FC498]
GTGGCATCCTCCCCCACCGACATCAAAGGCAAATATGTTAAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCCAAAT
GGCTTCAACCGGCGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGGCAGGCGTGAAAACGGTTCGGTAAAAT
GGTTCTGCGGACAGCCGGTTACGCGCACCGACAAAGCCAACGACGACGTTACCGACGACGCCACCGCCACAATGAATTCA
AGCAACGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGCCAGGCGTCAAGACGGTTCGGTAAAATGGTTCTG
CGGACAGCCGGTTAAGCGCGACAACGCCAACGCCGACACCGTCACCGCCGACGCCACCGGCAACGACGGCAAAATCGACA
CCAAGCACCTGCCGTCAACCTGCCGCGACGCAGCATCTGCCGGTTGCATAGAAACACCACCTACGGCTTTCTATAAAAAT
ACCTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(3-61)

Pilin (bacterial filament) (Pilin)

(72-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

49.66

91.304

0.453

Multiple sequence alignment