Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   JGX27_RS03635 Genome accession   NZ_CP077423
Coordinates   665735..666400 (+) Length   221 a.a.
NCBI ID   WP_009853767.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus TX20005     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 660735..671400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGX27_RS03615 (JGX27_03615) - 662154..663734 (+) 1581 WP_009853763.1 DEAD/DEAH box helicase -
  JGX27_RS03620 (JGX27_03620) - 663778..664050 (-) 273 WP_009853764.1 GIY-YIG nuclease family protein -
  JGX27_RS03625 (JGX27_03625) - 664025..664786 (-) 762 WP_009853765.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  JGX27_RS03630 (JGX27_03630) - 664894..665640 (+) 747 WP_009853766.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  JGX27_RS03635 (JGX27_03635) comEA 665735..666400 (+) 666 WP_009853767.1 helix-hairpin-helix domain-containing protein Machinery gene
  JGX27_RS03640 (JGX27_03640) comEC/celB 666393..668624 (+) 2232 WP_043878536.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JGX27_RS03645 (JGX27_03645) holA 668698..669735 (+) 1038 WP_009853769.1 DNA polymerase III subunit delta -
  JGX27_RS03650 (JGX27_03650) sodA 669824..670432 (+) 609 WP_014619989.1 superoxide dismutase SodA -
  JGX27_RS03655 (JGX27_03655) - 670584..671309 (+) 726 WP_012961667.1 YebC/PmpR family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23431.12 Da        Isoelectric Point: 4.3235

>NTDB_id=581502 JGX27_RS03635 WP_009853767.1 665735..666400(+) (comEA) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
MIEEIKEKLLENKTLVAVLGTILVMLIGFFAWSNVTKTTVDAQSDLPALSTTFSASSSASDLKTERSSSQTETQKVFVDI
KGAVKNEGVYELSSGSRVTDVVKLAGGFTEDADKKSVNLAEKVTDEAVIYVARVGENVAPATTNSQANGSAQQEESSDKI
NLNTATLAELQTISGIGAKRAQDIIDYRDANGGFSSVDDLANVSGIGEKTLEKLKSEVTVD

Nucleotide


Download         Length: 666 bp        

>NTDB_id=581502 JGX27_RS03635 WP_009853767.1 665735..666400(+) (comEA) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
ATGATTGAAGAAATAAAAGAAAAACTTTTGGAGAACAAAACGTTGGTAGCGGTGTTGGGAACAATACTTGTTATGTTAAT
CGGATTTTTTGCTTGGTCAAATGTGACAAAAACAACAGTGGATGCGCAAAGTGACCTACCTGCCCTAAGCACGACTTTTT
CGGCAAGTAGCAGCGCAAGTGATTTAAAAACAGAACGTTCAAGTTCGCAAACTGAAACTCAAAAAGTGTTTGTAGATATC
AAAGGCGCTGTGAAAAATGAGGGTGTTTATGAGCTTTCAAGCGGTAGCCGTGTGACAGATGTGGTCAAATTAGCAGGTGG
TTTTACAGAAGATGCTGATAAGAAGTCGGTGAATTTGGCTGAAAAAGTAACCGATGAAGCGGTGATTTATGTGGCAAGAG
TTGGTGAAAATGTTGCTCCTGCAACGACTAATTCACAAGCAAATGGCAGCGCTCAACAGGAAGAAAGTTCAGATAAAATC
AATCTTAATACCGCAACTTTGGCGGAACTCCAGACGATTTCTGGCATTGGCGCCAAACGTGCCCAAGACATTATTGACTA
CCGTGATGCCAATGGTGGTTTTTCATCAGTTGATGACTTGGCGAATGTGTCTGGTATCGGAGAAAAAACACTAGAAAAGC
TAAAATCTGAGGTGACCGTTGATTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(157-219)

SLBB domain (SLBB)

(78-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Streptococcus thermophilus LMD-9

48.498

100

0.511
  comEA/celA/cilE Streptococcus mitis SK321

47.964

100

0.48
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

46.637

100

0.471
  comEA/celA/cilE Streptococcus pneumoniae Rx1

45.74

100

0.462
  comEA/celA/cilE Streptococcus pneumoniae D39

45.74

100

0.462
  comEA/celA/cilE Streptococcus pneumoniae R6

45.74

100

0.462
  comEA/celA/cilE Streptococcus mitis NCTC 12261

45.291

100

0.457
  comEA Latilactobacillus sakei subsp. sakei 23K

38.117

100

0.385
  comEA Staphylococcus aureus MW2

36.364

99.548

0.362