Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   I6L24_RS02325 Genome accession   NZ_CP077369
Coordinates   474840..477005 (-) Length   721 a.a.
NCBI ID   WP_005263887.1    Uniprot ID   N9Q7Y1
Organism   Acinetobacter lwoffii strain FDAARGOS 1394     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 469840..482005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L24_RS02310 (I6L24_02310) - 472270..473148 (-) 879 WP_005263881.1 hypothetical protein -
  I6L24_RS02315 (I6L24_02315) aroB 473159..474238 (-) 1080 WP_085064333.1 3-dehydroquinate synthase -
  I6L24_RS02320 (I6L24_02320) aroK 474267..474803 (-) 537 WP_005263885.1 shikimate kinase AroK -
  I6L24_RS02325 (I6L24_02325) pilQ 474840..477005 (-) 2166 WP_005263887.1 type IV pilus secretin PilQ family protein Machinery gene
  I6L24_RS02330 (I6L24_02330) pilP 477023..477550 (-) 528 WP_004732447.1 pilus assembly protein PilP Machinery gene
  I6L24_RS02335 (I6L24_02335) comO 477550..478272 (-) 723 WP_216986384.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6L24_RS02340 (I6L24_02340) comN 478269..478907 (-) 639 WP_180180631.1 PilN domain-containing protein Machinery gene
  I6L24_RS02345 (I6L24_02345) pilM 478907..479965 (-) 1059 WP_004644949.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 721 a.a.        Molecular weight: 78367.62 Da        Isoelectric Point: 5.0058

>NTDB_id=580973 I6L24_RS02325 WP_005263887.1 474840..477005(-) (pilQ) [Acinetobacter lwoffii strain FDAARGOS 1394]
MNKSIKEFIFGDVNTMNRVFRQFSMGAVAIAVMQAASAQVSMTNVVPMQLPGQGTEIRVMFNGLPPQPQAYQLESPSRLI
LDFDKAQQNLKQSSIPVATREASSVDVTSDAQRARLTVNLTEAGAFTTRVEGNTFILKINSATPVAITQPVQQQSAQGIS
NIGFQRGAQGEGQVVIDLAGNNTPVDVQQQGTKVIVRTLGSKIPAHLTRRLNVTDFATPVSSVDAVNQNGSGVITIQSAE
SYEYMAYQTDNKLTISLKRPEAKSPLRPKTVAYSGKKISLDFQDIEVRRVLQLLADFTDINMVAADSVQGNITLRLKEVP
WDQALDIVLKTKNLDKRRNGNVIWIAPVTELIKAEEEEAKAIKQSVALAPIQTEYMQLSYAKAADIEKLITQNKGASSSG
SSSNTTNNDERESLLSSRGSVSIDARTNTIIVNDTQPFIDKIRNMVDLLDVQVKQVMVEARIVRATTDFTKEMGVKWGIL
SQGITNNDSLLVGGSDTTLWDLRDPQESDLGGYTYEIQRPQNLNVDLGVTSPGASRIAFGLISLSDFMLDLELSALQADG
YGEVISTPKVLTADKQKATVASGSQIPYQSAEGGGANAVSTTEFIDATLSLDVTPSITPDGKVQMELNITSDSPGNPTPT
GQLTINKNQINTNVLVDNGETVVLGGIFEQETRNAQTKVPFLGDIPYVGRLFRKDLKSDNKRELLIFVTPRIVNDSVSRN
H

Nucleotide


Download         Length: 2166 bp        

>NTDB_id=580973 I6L24_RS02325 WP_005263887.1 474840..477005(-) (pilQ) [Acinetobacter lwoffii strain FDAARGOS 1394]
ATGAATAAGAGTATTAAAGAATTTATTTTTGGGGATGTTAATACAATGAATCGTGTGTTTCGTCAGTTTTCAATGGGTGC
TGTTGCGATTGCGGTGATGCAAGCGGCCAGTGCGCAGGTTTCAATGACCAATGTAGTACCCATGCAGCTTCCTGGACAAG
GAACTGAGATTCGGGTGATGTTCAATGGTTTGCCACCACAACCACAAGCCTATCAATTAGAATCGCCGTCACGTTTGATT
CTGGACTTTGACAAAGCACAACAGAATTTAAAACAAAGCAGTATTCCGGTGGCAACACGTGAAGCCAGTTCAGTGGATGT
CACTTCGGATGCTCAGCGGGCACGTCTAACGGTAAATCTGACCGAGGCTGGAGCCTTTACGACTCGCGTGGAAGGCAATA
CCTTTATTCTTAAAATTAACTCGGCAACTCCTGTAGCCATAACTCAACCTGTGCAGCAACAGTCAGCTCAGGGTATTAGC
AACATTGGTTTCCAGCGCGGTGCGCAAGGTGAGGGCCAAGTCGTTATTGATCTAGCAGGTAATAATACCCCGGTTGATGT
ACAACAGCAGGGTACCAAAGTTATTGTACGCACTTTAGGTTCCAAGATTCCGGCTCATTTGACCCGCCGTCTTAATGTGA
CTGATTTCGCGACTCCGGTATCGAGTGTGGATGCTGTGAATCAAAATGGTTCAGGGGTCATTACGATTCAGTCTGCGGAA
AGTTATGAATATATGGCTTATCAGACTGATAACAAGCTGACCATCAGCTTGAAACGACCAGAAGCCAAGAGTCCATTGCG
TCCTAAAACCGTTGCTTATAGCGGTAAGAAAATTTCGCTAGATTTCCAGGATATTGAAGTGCGCCGCGTGCTACAGCTCT
TAGCGGATTTTACCGATATCAATATGGTGGCTGCGGATAGTGTGCAAGGCAATATTACCTTGCGCTTGAAAGAGGTACCT
TGGGATCAGGCGCTGGATATTGTGCTGAAAACCAAAAATCTGGATAAACGGCGCAATGGCAATGTGATCTGGATCGCACC
AGTTACAGAGCTGATAAAGGCTGAAGAGGAAGAAGCTAAGGCGATTAAGCAGAGTGTTGCACTTGCGCCTATCCAAACGG
AATATATGCAGCTCAGTTATGCCAAAGCCGCTGATATTGAGAAACTGATTACGCAGAATAAAGGCGCATCTAGTTCAGGT
AGTTCGAGTAACACTACAAATAATGATGAGAGAGAAAGCTTATTGAGTTCACGTGGCTCTGTGTCTATTGATGCACGAAC
CAATACTATTATTGTGAATGATACCCAGCCTTTTATTGATAAAATCCGTAATATGGTAGATCTGCTCGATGTACAGGTCA
AGCAGGTGATGGTCGAAGCACGTATTGTGCGAGCTACCACTGACTTCACCAAAGAAATGGGAGTGAAGTGGGGGATTCTA
TCTCAAGGGATTACCAACAATGATAGCCTTCTGGTCGGTGGTAGTGACACGACGTTATGGGATCTCAGAGATCCCCAAGA
AAGTGATTTAGGTGGATATACTTATGAGATTCAACGTCCACAAAACCTTAATGTAGACTTGGGTGTAACCAGTCCGGGTG
CAAGTCGTATTGCTTTTGGTCTAATCAGTCTATCGGATTTTATGTTGGATCTTGAGCTTTCTGCACTTCAGGCAGATGGC
TATGGTGAGGTGATTTCTACCCCTAAAGTACTGACTGCGGATAAGCAGAAAGCAACTGTTGCCTCTGGTTCACAAATTCC
GTATCAATCTGCTGAAGGTGGAGGTGCTAATGCTGTGTCCACTACTGAGTTTATTGATGCCACCTTAAGTCTGGATGTGA
CGCCAAGTATTACGCCAGATGGTAAAGTGCAGATGGAACTCAATATTACCAGTGATTCGCCGGGTAATCCGACACCGACT
GGACAGCTTACTATTAACAAAAACCAGATCAATACCAATGTCTTGGTTGATAATGGTGAAACAGTCGTTTTAGGTGGTAT
TTTTGAGCAGGAAACCCGTAATGCACAAACCAAGGTGCCATTCTTGGGGGATATTCCTTATGTAGGACGTTTATTCCGTA
AAGATTTAAAGTCGGATAATAAACGTGAGCTACTGATTTTCGTTACACCTCGAATTGTTAATGACAGTGTTTCAAGAAAT
CATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(375-455)

Bacterial type II and III secretion system protein (Secretin)

(555-713)

AMIN domain (AMIN)

(55-136)

Secretin and TonB N terminus short domain (STN)

(305-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9Q7Y1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

73.014

100

0.739
  pilQ Acinetobacter baumannii strain A118

72.877

100

0.738
  comQ Acinetobacter baylyi ADP1

70.531

99.307

0.7
  pilQ Pseudomonas aeruginosa PAK

41.236

96.533

0.398
  pilQ Legionella pneumophila strain Lp02

37.147

98.197

0.365
  pilQ Legionella pneumophila strain ERS1305867

37.179

97.365

0.362