Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   I6L24_RS02340 Genome accession   NZ_CP077369
Coordinates   478269..478907 (-) Length   212 a.a.
NCBI ID   WP_180180631.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain FDAARGOS 1394     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 473269..483907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L24_RS02320 (I6L24_02320) aroK 474267..474803 (-) 537 WP_005263885.1 shikimate kinase AroK -
  I6L24_RS02325 (I6L24_02325) pilQ 474840..477005 (-) 2166 WP_005263887.1 type IV pilus secretin PilQ family protein Machinery gene
  I6L24_RS02330 (I6L24_02330) pilP 477023..477550 (-) 528 WP_004732447.1 pilus assembly protein PilP Machinery gene
  I6L24_RS02335 (I6L24_02335) comO 477550..478272 (-) 723 WP_216986384.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6L24_RS02340 (I6L24_02340) comN 478269..478907 (-) 639 WP_180180631.1 PilN domain-containing protein Machinery gene
  I6L24_RS02345 (I6L24_02345) pilM 478907..479965 (-) 1059 WP_004644949.1 pilus assembly protein PilM Machinery gene
  I6L24_RS02350 (I6L24_02350) ponA 480131..482656 (+) 2526 WP_216986385.1 penicillin-binding protein PBP1a -
  I6L24_RS02355 (I6L24_02355) - 482708..483511 (-) 804 WP_085064368.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23899.09 Da        Isoelectric Point: 4.9286

>NTDB_id=580976 I6L24_RS02340 WP_180180631.1 478269..478907(-) (comN) [Acinetobacter lwoffii strain FDAARGOS 1394]
MARINLLPWRDELRIKRNNEFVAICVGALFLGLAAAGSTWFYYDHKLQDQEQANQLIQSTNQNLDVQLKALEGLQEQRNA
IVERMKLIQGLQTQRPIAVHLIDEIVRVTPSNMYITKFQRTGDKFTIEGRAESPNTVAELLRNLEASSWYRNAFMNAFLV
AEEAKEKAPSSIIPRVEESYGSFTVTVDLDQIAQPVLNEEQQAVATTTGASS

Nucleotide


Download         Length: 639 bp        

>NTDB_id=580976 I6L24_RS02340 WP_180180631.1 478269..478907(-) (comN) [Acinetobacter lwoffii strain FDAARGOS 1394]
ATGGCAAGAATTAACTTACTTCCTTGGCGTGATGAGCTAAGAATTAAAAGAAATAATGAATTTGTGGCAATCTGCGTGGG
GGCGCTTTTCTTGGGATTAGCGGCAGCAGGTTCAACCTGGTTTTATTATGATCACAAACTTCAGGATCAGGAGCAGGCCA
ATCAGCTGATTCAAAGTACCAACCAGAATCTGGATGTGCAGTTAAAGGCGCTTGAAGGTTTGCAAGAGCAGCGTAATGCG
ATTGTTGAACGGATGAAACTGATTCAGGGTCTACAAACTCAGCGTCCGATTGCGGTACATTTGATTGATGAAATTGTACG
GGTGACCCCAAGCAATATGTATATCACCAAATTCCAGCGTACCGGTGACAAGTTTACCATTGAAGGTCGGGCTGAGAGTC
CAAATACAGTAGCAGAACTGCTCCGTAATCTGGAGGCTTCATCTTGGTATCGAAATGCCTTTATGAACGCTTTCCTGGTG
GCTGAAGAAGCAAAAGAAAAGGCACCGAGCTCTATTATTCCACGTGTGGAAGAGTCCTACGGTAGTTTTACCGTGACGGT
AGATCTGGATCAGATCGCTCAGCCAGTACTTAACGAAGAACAACAAGCAGTCGCTACAACTACGGGGGCATCATCATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Acinetobacter baylyi ADP1

67.464

98.585

0.665
  pilN Acinetobacter baumannii D1279779

71.503

91.038

0.651