Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   MTR79_RS01080 Genome accession   NZ_CP094918
Coordinates   217074..217673 (+) Length   199 a.a.
NCBI ID   WP_048457026.1    Uniprot ID   A0ABN3X1P9
Organism   Streptomyces sp. BJ20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 212074..222673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTR79_RS01055 - 212352..212957 (+) 606 WP_244788777.1 DJ-1/PfpI family protein -
  MTR79_RS01060 - 212954..213424 (+) 471 WP_244788779.1 MarR family transcriptional regulator -
  MTR79_RS01065 - 213503..215347 (+) 1845 WP_244788781.1 serine/threonine-protein kinase -
  MTR79_RS01070 - 215582..216325 (-) 744 WP_189363842.1 SLATT domain-containing protein -
  MTR79_RS01075 - 216628..216969 (+) 342 WP_078492938.1 YbaB/EbfC family nucleoid-associated protein -
  MTR79_RS01080 recR 217074..217673 (+) 600 WP_048457026.1 recombination mediator RecR Machinery gene
  MTR79_RS01085 - 217666..218325 (+) 660 WP_048457025.1 DUF5063 domain-containing protein -
  MTR79_RS01090 - 218329..218946 (-) 618 WP_244788783.1 ankyrin repeat domain-containing protein -
  MTR79_RS01095 - 218954..219241 (-) 288 WP_244788785.1 hypothetical protein -
  MTR79_RS01100 - 219624..220901 (+) 1278 WP_048457023.1 aspartate kinase -
  MTR79_RS01105 - 220901..221983 (+) 1083 WP_244788787.1 aspartate-semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21793.14 Da        Isoelectric Point: 4.9848

>NTDB_id=580975 MTR79_RS01080 WP_048457026.1 217074..217673(+) (recR) [Streptomyces sp. BJ20]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQALMEVKAKVRFCAVCGNVAQEEQCNICRDTRRDPAV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIDGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=580975 MTR79_RS01080 WP_048457026.1 217074..217673(+) (recR) [Streptomyces sp. BJ20]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGCTGGGGCGGCTTCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCGGAACCGACGGACGTACGGCGTCTGGCGCAGGCGCTGATGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGGTGTGCGGGAACGTCGCGCAGGAGGAGCAGTGCAACATCTGCCGCGACACCCGGCGCGACCCCGCGGTC
ATCTGTGTCGTGGAGGAGCCGAAGGACGTCGTCGCGATCGAGCGCACGCGTGAGTTCCGGGGCCGCTACCACGTGCTGGG
CGGCGCGATCAGCCCGATCGACGGGGTGGGCCCCGACGATCTGCGCATAAGGGAGCTGCTGGCCCGGCTGGCGGACGGCA
CGGTCACCGAGCTGATCCTCGCCACGGACCCCAATCTCGAAGGCGAGGCCACGGCCACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGCGGCGACCTGGAATACGCGGACGAGGTCACGCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(80-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.633

98.492

0.558
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452