Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   I6L46_RS00095 Genome accession   NZ_CP077301
Coordinates   21297..21617 (-) Length   106 a.a.
NCBI ID   WP_167570524.1    Uniprot ID   -
Organism   Aeromonas sp. FDAARGOS 1416     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 16297..26617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L46_RS00075 (I6L46_00075) - 16703..17392 (-) 690 WP_216977023.1 DnaT-like ssDNA-binding domain-containing protein -
  I6L46_RS00080 (I6L46_00080) - 17632..18603 (+) 972 WP_201906618.1 response regulator -
  I6L46_RS00085 (I6L46_00085) - 18678..20075 (-) 1398 WP_021231963.1 peptide MFS transporter -
  I6L46_RS00090 (I6L46_00090) galU 20289..21200 (-) 912 WP_005339121.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  I6L46_RS00095 (I6L46_00095) comE1/comEA 21297..21617 (-) 321 WP_167570524.1 ComEA family DNA-binding protein Machinery gene
  I6L46_RS00100 (I6L46_00100) pta 21995..24175 (-) 2181 WP_005339119.1 phosphate acetyltransferase -
  I6L46_RS00105 (I6L46_00105) - 24230..25432 (-) 1203 WP_005339118.1 acetate kinase -
  I6L46_RS00110 (I6L46_00110) yfbV 25737..26177 (+) 441 WP_005339116.1 terminus macrodomain insulation protein YfbV -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11304.29 Da        Isoelectric Point: 9.9853

>NTDB_id=580641 I6L46_RS00095 WP_167570524.1 21297..21617(-) (comE1/comEA) [Aeromonas sp. FDAARGOS 1416]
MLMKKLSAVMLLACLPLFSQPVLAADKATPKQTTTTTVAKESGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=580641 I6L46_RS00095 WP_167570524.1 21297..21617(-) (comE1/comEA) [Aeromonas sp. FDAARGOS 1416]
ATGCTGATGAAGAAGCTCTCTGCAGTCATGCTGCTGGCCTGCTTGCCCCTGTTCAGCCAACCCGTGCTGGCCGCAGATAA
GGCAACGCCCAAGCAAACAACTACGACCACGGTCGCCAAGGAGTCCGGCAAGCTGAATATCAATACGGCCACCCTTGCCG
AACTGACCAGCCTGAAAGGGATTGGCGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCGGATGTCAATGGCATTGGCCCGGCCACGCTGGAAGCCAACCGTGACATGATCATCGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

50

100

0.528
  comEA/comE1 Glaesserella parasuis strain SC1401

46.903

100

0.5
  comEA Vibrio cholerae C6706

45.631

97.17

0.443
  comEA Vibrio cholerae strain A1552

45.631

97.17

0.443
  comEA Vibrio parahaemolyticus RIMD 2210633

45.918

92.453

0.425
  comEA Acinetobacter baylyi ADP1

51.316

71.698

0.368
  comEA Vibrio campbellii strain DS40M4

37.143

99.057

0.368
  comEA Legionella pneumophila str. Paris

39.394

93.396

0.368
  comEA Legionella pneumophila strain ERS1305867

39.394

93.396

0.368