Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ECBG_RS00195 Genome accession   NC_020995
Coordinates   40232..41470 (+) Length   412 a.a.
NCBI ID   WP_015508693.1    Uniprot ID   C9A8V7
Organism   Enterococcus casseliflavus EC20     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 35232..46470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECBG_RS00175 (ECBG_01183) - 35464..36732 (+) 1269 WP_015508690.1 pitrilysin family protein -
  ECBG_RS00180 (ECBG_01184) - 36725..38023 (+) 1299 WP_015508691.1 pitrilysin family protein -
  ECBG_RS00185 (ECBG_01185) - 38488..39390 (+) 903 WP_015508692.1 helix-turn-helix domain-containing protein -
  ECBG_RS00190 (ECBG_01186) pgsA 39523..40104 (+) 582 WP_005226440.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ECBG_RS00195 (ECBG_01187) cinA 40232..41470 (+) 1239 WP_015508693.1 competence/damage-inducible protein A Machinery gene
  ECBG_RS00200 (ECBG_01188) recA 41573..42616 (+) 1044 WP_005226448.1 recombinase RecA Machinery gene
  ECBG_RS00205 (ECBG_01189) rny 42860..44434 (+) 1575 WP_005232891.1 ribonuclease Y -
  ECBG_RS00210 (ECBG_01190) treR 44733..45449 (-) 717 WP_005226457.1 trehalose operon repressor -
  ECBG_RS00215 (ECBG_01191) pgmB 45504..46154 (-) 651 WP_015508694.1 beta-phosphoglucomutase -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44702.79 Da        Isoelectric Point: 4.6402

>NTDB_id=57804 ECBG_RS00195 WP_015508693.1 40232..41470(+) (cinA) [Enterococcus casseliflavus EC20]
MKAEIIAVGTELLLGQVVNTNATFLSEELASLGIDVFYHSVVGDNPNRLEELLTIADKRSDLIVLCGGLGPTDDDLTKQV
TARHVGQELVRDEPGYHQLKAFFENSQRRMTENNLRQTLVFKDGVSLPNPNGLAIGIFYQTAATSYLLLPGPPSELQAMF
LTHAKPLLLEQFPQEEVLLSRVLRYYGIGESALVTELADLIENQVNPTIAPYAKPNEVTLRLTVKTADEAQGIKQLDALE
ETVQARVGAYFYGYGEQNSLAETVVGLLIEKKKTVTAAESLTAGLFQATLGGISGVSEVFPGGFVTYSAATKSKLLGIDP
GLLESYGTVSQECAEAMAVYARKQAETDYAVAFTGVAGPDELEGQPKGTVWIALASDKGVSSQLYHFNRDRAYIRHSAVM
AGLNQIRKELLN

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=57804 ECBG_RS00195 WP_015508693.1 40232..41470(+) (cinA) [Enterococcus casseliflavus EC20]
ATGAAAGCAGAAATTATTGCAGTCGGGACCGAATTACTTTTAGGACAGGTGGTGAATACGAACGCGACCTTCTTGTCAGA
AGAACTGGCAAGTCTTGGGATCGATGTTTTTTATCATAGTGTTGTCGGGGACAACCCCAATCGCTTAGAGGAATTGCTGA
CGATCGCCGACAAACGCAGCGACTTGATCGTGCTGTGCGGCGGCCTAGGGCCCACCGACGATGACTTGACGAAACAAGTC
ACTGCCCGTCATGTGGGACAAGAGTTAGTCAGAGATGAACCAGGTTATCACCAATTGAAAGCCTTCTTTGAAAACAGTCA
ACGGAGGATGACGGAAAACAATTTGCGGCAGACCCTCGTTTTTAAAGACGGTGTGTCTTTGCCAAATCCTAACGGACTAG
CGATCGGGATCTTTTATCAGACAGCCGCTACCAGTTATTTGCTGCTGCCAGGACCACCAAGTGAACTACAGGCGATGTTT
CTTACCCACGCAAAACCACTTCTGTTAGAGCAGTTTCCCCAAGAAGAGGTCTTGCTGTCTCGCGTTTTGCGCTATTACGG
GATCGGGGAATCGGCATTGGTCACAGAATTGGCCGATTTGATCGAGAATCAAGTCAATCCCACCATCGCTCCTTATGCCA
AACCCAATGAGGTCACGCTGCGTCTGACGGTCAAAACTGCAGACGAGGCGCAAGGGATCAAACAATTGGATGCGTTAGAA
GAAACCGTCCAAGCACGGGTCGGTGCGTATTTCTATGGGTATGGGGAACAAAATTCGCTGGCAGAAACAGTCGTCGGGCT
ACTGATCGAGAAAAAGAAAACCGTCACCGCAGCGGAAAGTTTGACCGCTGGTTTGTTCCAAGCGACCCTAGGAGGGATTT
CTGGCGTCTCTGAGGTGTTTCCCGGTGGGTTCGTGACATATTCTGCTGCAACAAAAAGCAAGCTCTTAGGCATCGATCCA
GGGCTTTTGGAAAGCTATGGGACTGTTAGTCAGGAATGTGCAGAAGCAATGGCCGTCTATGCCCGCAAACAAGCCGAGAC
TGATTATGCGGTGGCGTTTACTGGTGTTGCTGGTCCAGACGAGTTAGAAGGTCAGCCTAAAGGCACCGTTTGGATCGCCT
TAGCTTCTGACAAAGGCGTCTCGAGCCAGCTGTATCACTTCAACCGCGACCGCGCCTATATTCGGCATAGTGCCGTCATG
GCGGGCTTAAATCAAATACGTAAGGAATTATTAAATTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C9A8V7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

50.591

100

0.519
  cinA Streptococcus mitis SK321

50.355

100

0.517
  cinA Streptococcus pneumoniae D39

50.355

100

0.517
  cinA Streptococcus pneumoniae Rx1

50.355

100

0.517
  cinA Streptococcus pneumoniae R6

50.355

100

0.517
  cinA Streptococcus mitis NCTC 12261

49.882

100

0.512
  cinA Streptococcus mutans UA159

50

100

0.505
  cinA Bacillus subtilis subsp. subtilis str. 168

45.232

99.272

0.449
  cinA Streptococcus suis isolate S10

42.995

100

0.432

Multiple sequence alignment