Detailed information NTG0577434

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: KRG72_RS00700
• Genome accession: NZ_CP076703
• Coordinates: 104787..105830 (+)
• Length: 347 a.a.
• NCBI ID: WP_258255453.1
• Uniprot ID: -
• Organism: Streptococcus equinus strain S1
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 99787..110830

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KRG72_RS00690 (KRG72_00690)	-	103481..103849 (+)	369	WP_258255451.1	DUF1033 family protein	-
KRG72_RS00695 (KRG72_00695)	comYA	103922..104863 (+)	942	WP_258255452.1	competence type IV pilus ATPase ComGA	Machinery gene
KRG72_RS00700 (KRG72_00700)	comYB	104787..105830 (+)	1044	WP_258255453.1	competence type IV pilus assembly protein ComGB	Machinery gene
KRG72_RS00705 (KRG72_00705)	comGC/cglC	105830..106123 (+)	294	WP_258255454.1	competence type IV pilus major pilin ComGC	Machinery gene
KRG72_RS00710 (KRG72_00710)	comYD	106107..106538 (+)	432	WP_258255455.1	competence type IV pilus minor pilin ComGD	Machinery gene
KRG72_RS00715 (KRG72_00715)	comYE	106492..106785 (+)	294	WP_258255456.1	competence type IV pilus minor pilin ComGE	Machinery gene
KRG72_RS00720 (KRG72_00720)	comYF	106769..107206 (+)	438	WP_133018089.1	competence type IV pilus minor pilin ComGF	Machinery gene
KRG72_RS00725 (KRG72_00725)	comGG	107178..107528 (+)	351	WP_074561135.1	competence type IV pilus minor pilin ComGG	-
KRG72_RS00730 (KRG72_00730)	comYH	107582..108538 (+)	957	WP_074561136.1	class I SAM-dependent methyltransferase	Machinery gene
KRG72_RS00735 (KRG72_00735)	-	108592..109791 (+)	1200	WP_258255457.1	acetate kinase	-
KRG72_RS00740 (KRG72_00740)	-	109951..110148 (+)	198	WP_258255458.1	helix-turn-helix transcriptional regulator	-
KRG72_RS00745 (KRG72_00745)	-	110164..110364 (+)	201	WP_006531740.1	hypothetical protein	-
KRG72_RS00750 (KRG72_00750)	-	110365..110820 (+)	456	WP_258255459.1	ABC transporter permease	-

Sequence

Protein

• Length: 347 a.a.
• Molecular weight: 39588.04 Da
• Isoelectric Point: 9.7818

>NTDB_id=577434 KRG72_RS00700 WP_258255453.1 104787..105830(+) (comYB) [Streptococcus equinus strain S1]
MSKLKALLGTDILALRKQKSKKLPFKKQQKVIQLFNNLFNSGFNLTEIVSFLRRSQLLAEVYVDSMQESLLSGASLADMM
AKLGFSDTIVTQIALADVHGNCQQSLLKIDGYLASMSVVRKKLIEVATYPLILLSFLILIMLGLKNYLLPQLENQNFATQ
IISHFPMIFLGGFALLALGILLGVLYAKRLSPIYLYSQLSRLPIFGRYVRLYLTAYYAREWGNLIGQGIELMEIVELMQR
QKSRLFQEIGKDMQKALLSGQSFHQKVLDYPFFLRELSLMIEYGEVKSKLGRELDIYAEETWQNFFSQLTQATQLIQPLV
FVFVALIIVLIYVAMLLPMYQNMGGNF

Nucleotide

• Length: 1044 bp

>NTDB_id=577434 KRG72_RS00700 WP_258255453.1 104787..105830(+) (comYB) [Streptococcus equinus strain S1]
ATGAGCAAATTGAAAGCCTTGCTAGGGACGGACATATTAGCCTTGAGGAAGCAAAAATCGAAAAAATTGCCTTTTAAAAA
ACAGCAGAAGGTGATTCAATTATTTAACAATCTCTTTAACAGTGGCTTTAATTTAACAGAAATTGTTTCTTTTTTGAGAC
GAAGTCAATTGTTGGCAGAAGTTTATGTGGATAGTATGCAAGAATCTTTGCTAAGCGGGGCAAGTTTGGCAGATATGATG
GCTAAATTAGGCTTTTCAGATACAATTGTCACTCAGATTGCTTTGGCAGATGTTCATGGAAATTGTCAGCAGAGTTTGTT
AAAAATTGATGGCTACTTGGCCAGTATGTCAGTTGTTCGAAAGAAATTGATTGAAGTGGCGACTTATCCTTTGATTTTGC
TCAGCTTTTTAATTCTGATTATGTTGGGCTTGAAAAACTATTTGCTGCCGCAGTTGGAAAATCAAAATTTTGCGACTCAG
ATTATCAGCCATTTTCCTATGATTTTTTTAGGTGGCTTTGCTCTTTTAGCTTTAGGAATTCTGCTTGGGGTTCTGTATGC
CAAGCGCTTATCGCCAATTTATCTGTATAGTCAGTTGAGTCGTTTGCCAATCTTTGGGCGGTACGTGCGTCTTTATTTGA
CCGCCTATTATGCGCGTGAGTGGGGAAATCTTATCGGGCAAGGTATTGAGCTTATGGAGATTGTAGAGCTCATGCAGCGG
CAAAAATCGCGCCTCTTTCAGGAAATTGGAAAAGACATGCAAAAAGCTTTGTTGTCTGGTCAGTCTTTTCATCAGAAAGT
GCTGGATTACCCTTTCTTTTTGCGTGAACTTAGTTTAATGATTGAATATGGCGAGGTCAAGTCAAAATTAGGTCGGGAGT
TAGATATTTATGCCGAAGAGACTTGGCAGAATTTCTTTAGTCAATTGACACAAGCAACGCAGTTGATTCAGCCTTTGGTC
TTTGTCTTTGTTGCTTTAATCATCGTTTTAATTTATGTGGCAATGCTTTTGCCAATGTATCAAAATATGGGAGGAAATTT
TTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (218-338)

• Type II secretion system (T2SS), protein F (T2SSF) (33-150)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	65.823	91.066	0.599
comYB	Streptococcus mutans UA159	65.823	91.066	0.599
comYB	Streptococcus gordonii str. Challis substr. CH1	58.529	97.983	0.573
comGB/cglB	Streptococcus mitis NCTC 12261	58.457	97.118	0.568
comGB/cglB	Streptococcus mitis SK321	57.567	97.118	0.559
comGB/cglB	Streptococcus pneumoniae Rx1	56.973	97.118	0.553
comGB/cglB	Streptococcus pneumoniae D39	56.973	97.118	0.553
comGB/cglB	Streptococcus pneumoniae R6	56.973	97.118	0.553
comGB/cglB	Streptococcus pneumoniae TIGR4	56.973	97.118	0.553
comGB	Lactococcus lactis subsp. cremoris KW2	51.786	96.83	0.501