Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   MQV61_RS09315 Genome accession   NZ_CP094339
Coordinates   1933182..1934609 (-) Length   475 a.a.
NCBI ID   WP_000980604.1    Uniprot ID   -
Organism   Escherichia coli strain W224N     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1928182..1939609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQV61_RS09280 hisL 1928766..1928816 (-) 51 WP_001364200.1 his operon leader peptide -
  MQV61_RS09285 yefM 1929099..1929350 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  MQV61_RS09290 yoeB 1929347..1929601 (+) 255 WP_000767822.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  MQV61_RS09295 yeeZ 1929684..1930508 (+) 825 WP_000754733.1 SDR family oxidoreductase -
  MQV61_RS09300 yeeY 1930554..1931483 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  MQV61_RS09305 yoeI 1931698..1931760 (+) 63 WP_010723108.1 membrane protein YoeI -
  MQV61_RS09310 plaP 1931750..1933108 (+) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  MQV61_RS09315 sbcB 1933182..1934609 (-) 1428 WP_000980604.1 exodeoxyribonuclease I Machinery gene
  MQV61_RS09320 dacD 1934818..1935983 (+) 1166 Protein_1829 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  MQV61_RS09325 sbmC 1936101..1936574 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  MQV61_RS09330 yeeA 1936772..1937830 (+) 1059 WP_001200890.1 FUSC family protein -
  MQV61_RS09335 tmaR 1938002..1938331 (+) 330 WP_000450409.1 DUF496 family protein -
  MQV61_RS26515 - 1938432..1938614 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  MQV61_RS09345 - 1938734..1938814 (+) 81 WP_023441679.1 hypothetical protein -
  MQV61_RS09350 - 1939103..1939183 (-) 81 Protein_1835 hypothetical protein -
  MQV61_RS09355 yeeW 1939229..1939423 (-) 195 WP_000988601.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54442.73 Da        Isoelectric Point: 5.4720

>NTDB_id=577438 MQV61_RS09315 WP_000980604.1 1933182..1934609(-) (sbcB) [Escherichia coli strain W224N]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=577438 MQV61_RS09315 WP_000980604.1 1933182..1934609(-) (sbcB) [Escherichia coli strain W224N]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGAGAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583