Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KNV97_RS21155 Genome accession   NZ_CP076643
Coordinates   3247465..3248682 (-) Length   405 a.a.
NCBI ID   WP_218562706.1    Uniprot ID   A0A975UAA5
Organism   Vibrio ostreae strain OG9-811     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3242465..3253682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNV97_RS21130 (KNV97_21130) parC 3242527..3244800 (+) 2274 WP_218562703.1 DNA topoisomerase IV subunit A -
  KNV97_RS21135 (KNV97_21135) yacG 3244928..3245125 (-) 198 WP_136486081.1 DNA gyrase inhibitor YacG -
  KNV97_RS21140 (KNV97_21140) zapD 3245162..3245902 (-) 741 WP_136486084.1 cell division protein ZapD -
  KNV97_RS21145 (KNV97_21145) coaE 3245934..3246542 (-) 609 WP_218562704.1 dephospho-CoA kinase -
  KNV97_RS21150 (KNV97_21150) pilD 3246545..3247414 (-) 870 WP_218562705.1 A24 family peptidase Machinery gene
  KNV97_RS21155 (KNV97_21155) pilC 3247465..3248682 (-) 1218 WP_218562706.1 type II secretion system F family protein Machinery gene
  KNV97_RS21160 (KNV97_21160) pilB 3248693..3250501 (-) 1809 WP_136486093.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  KNV97_RS21165 (KNV97_21165) - 3250501..3250911 (-) 411 WP_218562707.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  KNV97_RS21170 (KNV97_21170) nadC 3251085..3251972 (-) 888 WP_218562708.1 carboxylating nicotinate-nucleotide diphosphorylase -
  KNV97_RS21175 (KNV97_21175) ampD 3252115..3252663 (+) 549 WP_218562709.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  KNV97_RS21180 (KNV97_21180) fldB 3252693..3253214 (-) 522 WP_218562710.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44641.30 Da        Isoelectric Point: 10.7429

>NTDB_id=576839 KNV97_RS21155 WP_218562706.1 3247465..3248682(-) (pilC) [Vibrio ostreae strain OG9-811]
MSNSRLQHYRWHGRDNQGRIRRGSMLALSEHEVRDSLQRQSIRIRSITPRPVSLLSRYRQRLNSRDITLLTRQLATMLAS
GVALLPALQLIATNHNKAAVSALLRSMLRSLESGMPLSAAMQASGHNFDRLYIDLLRSGELSGNLAQILERLAQYRETSE
QLRAKVIKALLYPTIVINVAFAVTYLMLTLVIPEFERLFANLGSELPWFTRQVVAASHSLQTLGPWMVTAAALGAAGVCK
ARQAYPGLRLWLSRHSTRLPVLGPLLYKAALARFSRTLSTSLSSGLPLLTSLHSAAKTCGNAHLSHALDQIARDTASGMA
LHLAMRHCRIFPALMLQLVMIGEESGTLDEMLARIALSYENEVDNSVDNLGKILEPLLILLLGGVIGSLVVAMYLPIFNL
MSVLG

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=576839 KNV97_RS21155 WP_218562706.1 3247465..3248682(-) (pilC) [Vibrio ostreae strain OG9-811]
ATGTCGAACAGCAGATTACAACACTATCGTTGGCACGGCAGAGACAATCAGGGCCGGATACGGCGCGGCAGCATGCTGGC
TCTAAGCGAACACGAAGTCCGTGACAGCTTGCAACGTCAGTCGATCCGAATTCGCTCGATTACCCCGCGTCCCGTTTCAC
TGCTCAGCCGCTATCGCCAACGTCTGAACTCACGTGATATCACGTTATTAACCCGCCAGTTGGCCACTATGCTCGCCAGT
GGCGTGGCGCTCTTACCGGCGCTGCAGCTGATTGCGACCAACCATAACAAAGCAGCGGTATCAGCCTTGCTGCGCTCTAT
GCTACGCAGTCTGGAGAGCGGCATGCCGCTCTCAGCTGCGATGCAGGCCAGCGGTCACAACTTTGATCGCCTGTATATCG
ATCTGCTGCGCAGCGGCGAATTATCCGGAAACCTGGCACAAATTCTGGAACGCCTGGCGCAATATCGTGAAACCAGCGAA
CAACTGCGCGCCAAGGTTATCAAGGCGCTGCTCTACCCAACCATAGTGATCAACGTCGCCTTCGCGGTCACTTATCTGAT
GCTGACCTTAGTGATTCCGGAGTTTGAACGCCTGTTCGCCAATTTGGGCAGCGAGTTGCCCTGGTTTACCCGCCAGGTCG
TCGCGGCCTCTCACTCACTGCAGACATTGGGGCCCTGGATGGTCACCGCCGCGGCACTGGGCGCTGCCGGCGTCTGTAAA
GCGCGCCAGGCTTACCCCGGGCTGCGGCTCTGGCTCAGCCGCCATAGTACTCGTCTGCCGGTGCTCGGGCCACTGCTGTA
TAAAGCCGCTCTGGCCCGTTTCAGCCGTACTCTGTCGACCAGCCTCAGTTCGGGGCTACCGCTACTGACCAGCCTGCACT
CTGCAGCTAAAACCTGTGGGAATGCCCACCTGTCCCATGCTCTTGACCAGATCGCACGTGATACGGCCTCGGGGATGGCC
TTGCATCTGGCGATGCGTCACTGCCGCATTTTTCCTGCGCTGATGCTACAACTGGTGATGATAGGTGAAGAGTCCGGCAC
TCTGGATGAGATGCTGGCCAGAATTGCATTGAGTTATGAAAATGAGGTCGACAACAGCGTTGATAATCTGGGGAAAATCC
TCGAACCGCTGCTTATTTTACTGCTCGGTGGGGTGATTGGCAGCCTGGTGGTCGCAATGTATCTGCCAATCTTTAACTTG
ATGAGTGTATTAGGGTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-193)

Type II secretion system (T2SS), protein F (T2SSF)

(274-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

54.25

98.765

0.536
  pilC Vibrio campbellii strain DS40M4

51.99

99.259

0.516
  pilC Pseudomonas stutzeri DSM 10701

39.295

98.025

0.385
  pilC Acinetobacter baylyi ADP1

38.346

98.519

0.378
  pilC Acinetobacter baumannii D1279779

37.783

98.025

0.37
  pilG Neisseria gonorrhoeae MS11

36.409

99.012

0.36
  pilG Neisseria meningitidis 44/76-A

36.409

99.012

0.36