Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   KNV97_RS21150 Genome accession   NZ_CP076643
Coordinates   3246545..3247414 (-) Length   289 a.a.
NCBI ID   WP_218562705.1    Uniprot ID   -
Organism   Vibrio ostreae strain OG9-811     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3241545..3252414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNV97_RS21130 (KNV97_21130) parC 3242527..3244800 (+) 2274 WP_218562703.1 DNA topoisomerase IV subunit A -
  KNV97_RS21135 (KNV97_21135) yacG 3244928..3245125 (-) 198 WP_136486081.1 DNA gyrase inhibitor YacG -
  KNV97_RS21140 (KNV97_21140) zapD 3245162..3245902 (-) 741 WP_136486084.1 cell division protein ZapD -
  KNV97_RS21145 (KNV97_21145) coaE 3245934..3246542 (-) 609 WP_218562704.1 dephospho-CoA kinase -
  KNV97_RS21150 (KNV97_21150) pilD 3246545..3247414 (-) 870 WP_218562705.1 A24 family peptidase Machinery gene
  KNV97_RS21155 (KNV97_21155) pilC 3247465..3248682 (-) 1218 WP_218562706.1 type II secretion system F family protein Machinery gene
  KNV97_RS21160 (KNV97_21160) pilB 3248693..3250501 (-) 1809 WP_136486093.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  KNV97_RS21165 (KNV97_21165) - 3250501..3250911 (-) 411 WP_218562707.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  KNV97_RS21170 (KNV97_21170) nadC 3251085..3251972 (-) 888 WP_218562708.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 32203.25 Da        Isoelectric Point: 7.8732

>NTDB_id=576838 KNV97_RS21150 WP_218562705.1 3246545..3247414(-) (pilD) [Vibrio ostreae strain OG9-811]
MDIFNYYPWLFPALATLLGLIIGSFLNVVIYRLPQIMEREWRQECAESFPEYGIDPPQGTLTLSTPRSTCPHCQTPIRIR
DNVPLLSWLLLRGKCAHCRQSISARYPLIELLTALSSGFIALQLGFSVYSIALLGFTYVLIAATFIDSDTMLLPDQLTLP
LMWAGISLALFGVSPVSLQSAVIGAIAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPVIILLSSVIGL
IFGLIQLRLQKRGIDKAFPFGPYLALSGWLCMIYGQSIIAWYLHSVLGW

Nucleotide


Download         Length: 870 bp        

>NTDB_id=576838 KNV97_RS21150 WP_218562705.1 3246545..3247414(-) (pilD) [Vibrio ostreae strain OG9-811]
ATGGATATTTTTAACTATTACCCCTGGCTGTTTCCGGCCCTGGCCACACTGTTGGGGCTGATCATCGGCAGCTTTCTCAA
TGTCGTGATCTATCGACTGCCGCAAATCATGGAACGTGAATGGCGCCAGGAGTGCGCAGAGTCTTTTCCGGAATATGGGA
TTGATCCCCCACAGGGAACCCTGACGCTCAGTACTCCGCGCTCGACCTGCCCGCATTGCCAGACCCCGATTCGGATCCGT
GATAATGTCCCGCTGCTGAGCTGGCTGTTGCTGCGCGGCAAATGTGCTCACTGTCGCCAGTCGATCAGTGCCCGTTATCC
GCTGATTGAGCTGCTCACCGCCCTGAGCAGTGGCTTTATAGCCCTGCAGCTTGGTTTCAGCGTCTATAGCATAGCTCTGC
TTGGCTTTACCTACGTCCTGATTGCTGCCACCTTTATCGATTCCGATACCATGCTGCTGCCGGATCAGCTGACCCTGCCA
CTGATGTGGGCCGGGATTAGCCTGGCGCTGTTTGGCGTTAGCCCTGTCAGCTTGCAAAGTGCGGTAATCGGCGCCATCGC
CGGCTATCTGTGTCTGTGGTCGGTGTACTGGCTGTTTAAACTATTGACCGGTAAAGAAGGCATGGGCTACGGCGATTTTA
AGCTGCTGGCGGCGCTCGGTGCCTGGCTCGGCTGGCAACAGCTGCCGGTCATCATTCTGCTCTCATCCGTCATCGGCCTG
ATTTTTGGCCTGATTCAACTGCGCCTGCAAAAACGCGGTATCGATAAGGCATTTCCGTTTGGCCCTTATCTGGCCCTCTC
CGGCTGGTTATGCATGATCTATGGTCAGTCGATTATCGCTTGGTATTTACACTCAGTATTAGGATGGTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(137-244)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

75.694

99.654

0.754
  pilD Vibrio campbellii strain DS40M4

75.347

99.654

0.751
  pilD Acinetobacter nosocomialis M2

52.098

98.962

0.516
  pilD Acinetobacter baumannii D1279779

51.748

98.962

0.512
  pilD Neisseria gonorrhoeae MS11

49.474

98.616

0.488